Basic Information

Insect: Pseudomyrmex flavicornis
Gene Symbol: -
Assembly: GCA_014825475.1
Location: QVNW01000890.1:23631-26831[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.14 15 6.6 0.2 6 21 273 288 270 289 0.90

2 12 0.082 8.7 7.4 0.2 1 23 295 318 295 318 0.93

3 12 0.00013 0.014 16.2 1.6 3 23 332 353 331 353 0.96

4 12 0.028 3 8.9 1.3 3 23 366 386 366 386 0.97

5 12 8.7e-08 9.3e-06 26.2 1.5 2 23 429 450 428 450 0.97

6 12 0.0099 1.1 10.3 0.3 1 23 455 478 455 478 0.87

7 12 0.9 96 4.1 1.6 2 23 537 558 537 558 0.96

8 12 1.1e-05 0.0012 19.6 2.5 1 19 567 585 567 587 0.95

9 12 0.17 18 6.4 3.7 1 22 625 646 625 646 0.95

10 12 0.0023 0.25 12.3 1.0 1 23 672 694 672 694 0.99

11 12 0.015 1.6 9.7 0.0 1 23 759 782 759 782 0.98

12 12 2.8e-05 0.003 18.3 5.0 1 23 787 810 787 810 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.14	15	6.6	0.2	6	21	273	288	270	289	0.90
2	12	0.082	8.7	7.4	0.2	1	23	295	318	295	318	0.93
3	12	0.00013	0.014	16.2	1.6	3	23	332	353	331	353	0.96
4	12	0.028	3	8.9	1.3	3	23	366	386	366	386	0.97
5	12	8.7e-08	9.3e-06	26.2	1.5	2	23	429	450	428	450	0.97
6	12	0.0099	1.1	10.3	0.3	1	23	455	478	455	478	0.87
7	12	0.9	96	4.1	1.6	2	23	537	558	537	558	0.96
8	12	1.1e-05	0.0012	19.6	2.5	1	19	567	585	567	587	0.95
9	12	0.17	18	6.4	3.7	1	22	625	646	625	646	0.95
10	12	0.0023	0.25	12.3	1.0	1	23	672	694	672	694	0.99
11	12	0.015	1.6	9.7	0.0	1	23	759	782	759	782	0.98
12	12	2.8e-05	0.003	18.3	5.0	1	23	787	810	787	810	0.98

Sequence Information

Coding Sequence: ATGTGTTCTTCGGTAAACGTGAATCTCTTCACGATGGCTCCTATGGACAGGTGGGACAATGCCTGTAGATTGTGTTCGGAGGAAAGGAACGAGATGTTGCCCATTTTCGGCGATGAAGGCATGCAGCGCAGAGTAGTGCACAAACTGCGTGCCTGTCTGCCAGTATTGGTTTACAAAACCGATCCATTGCCCAAGCAGATTTGCCAGTTTTGCGCAGCTAGGCTGGACGATGCTTATCAATTTAGGGAGTATTGCCTGAATATTTACAGGAGTATGCATGCTGTATTGCTGAGGTACAAGAAAATTGAATCTGTACAGACTTTTTTCAATGCAATGAAGAACTCACCAGATCCATGTCAGTCACAGCTTTGCAAGGAAAAATCAAGAGCTCCACCTCCATTAGTTCCTTTATCAATTGCCATGTCTCTTGATGAGTCAGTGAATTCTGTAAACCAAATTACTCAACATCAGCTTCAAAGTACTGGTATGGAAGCCCTATCTGAACTACCATGTGAGGTAGAGATCAAGGAGATGAATGCAGATACAATTTTGAATACTGAAACTGCTGTTTATGAACCACCACGTAAAAAACTCAAATACTTAGAAACACTTGACATAGGTTTACAACCAAAAGCGGAGACTGTTTCTATATCTGATACAGAAGAAGAAACAGTTTCCAAGGCAGAACATCCAGCAAAAAAAGAAGAGAAGCGGACCAGTATTTTGGAACAAGTACTGACTGGTAATTTAACAATGAATAATCATCAGAAACTGCAACCTAAAGCAAAATTAACATCTGAATGGTGGTGTGCACCTTGCAACAATTATTATAAAACGAAAGACAGTCTAATGAAACATATGCAATTAGACTGTCCACGTGTATATACTTGTAGAACATGCTCTTTATCTTTTGATTCCGTCGAAGTTTTGGCGAAGCATGAAGCTAGTAATCATTTACAAGTCAAAGTAGATTTTGTTGGCAATTTGAAAGATTGTCATCAGTGTGACCGACAATTTGCAAGTTGGGAAATGTTGAGACAGCATAGATTACGAGATCATATCGCCGAATTAACTGAGATTGGAACTAACACGTGGTGTTCACTGTGCAATAGATTTTTTCCTACTGTAGAGAGTTATAAAAGTCACAAGCAATTACATCAAACCAATGAAAATTTAGTCCCGCAAAAACTGCAATCCGCAGAATCTGCATTTTCATCAAAGATAGCGGAAAATCCGAAAGAAGGTAAAAGAGAAGAACACTTCTATGAAAGTGTGAAGTCTCTTACATGTCCCACCTGTGGAAAGGTTTGCACCCAGCAAAGTGCATTGTCAAATCATATGCGCACTCACGAGCCAAAAAGACACAAATGCGAGATTTGTGGCCGGACATTTGGACTTTTTATACGTTTAGCGGCTCACAGAATGGCCGAGCATAATCAGCAGCCGACTATGTCAGCAATCGAGCAAGAAGAAGCATTAAATGCAGAAAGGGAAGCGAGAGAAGCTAGGAATCGTGGTATCAAAAATAAGTCTTATCCTGAGCTAATGGAGAAGAACGATATTTTGGCGGAAGACGAGTCCTCAAAGCGCAATTCTAAGAACGTAGCAAGATGTGGCATTTGTCTACAGTGGTTCAGCGATCACACGACAATGTTAACGCATCTTCAGACACACTCGGATACTTATTCCCATAAGAGCTTTTCTTGTCATATATGTAAAAAGTCATTTAAGGACCATAGCCAGCTGTTAAGACACGAAATATGTCACAATAAACGTTCATCTCTCGATTATGTCCCACTGTACACACCTAACGTTGGAAACAAATCGCATACGGACAAAATTCATCAAACGACACACACGGTGGATAAGACTTATCATTGCGCAAAGTGTAATAAAATCTTTTTCAAAGAAATGTCATTCCTTGCTCATCAATGTACAGGTGAACCACCTCATGCAAATATAGCCACTGCCAAATCTGTACAGAAGACGTCGTCTCACAGTAATAATAAGAAATACAAGTGTTCCAAATGTGAGGCGTCATTTCTAACTTCACAGTCTCGAAATGCTCATATGAGAATACACGTCGACAACTCGCACGGCAATACGGCACAGACACCAGAAATAAAGATTGAAACAGATGATCAAGAGATGCCAAAATTGTGTCCGGAAACATTAGTGGAGTACAATGTAACCCCTATCGAGCCAAAAATTGAAATTAATGAGCAAAGTACACCTCCGCCCCTTAAACGGACTTTAATTAAAACCGCTAGCGGATATCGATGCGGTGTATGTCAATCACCATTCGTGTCTAGAGAGTTAGCAGTAGCACATTTGAGGTCTGCACACCCCGTGATACCGTATCAGTGCCCTTATTGTAAAAAACGCTTCACAACGCAGTACATTTTTACCCATCACATTAAAACGGAACATCCTGACGAACCCGAGAAATAG
Protein Sequence: MCSSVNVNLFTMAPMDRWDNACRLCSEERNEMLPIFGDEGMQRRVVHKLRACLPVLVYKTDPLPKQICQFCAARLDDAYQFREYCLNIYRSMHAVLLRYKKIESVQTFFNAMKNSPDPCQSQLCKEKSRAPPPLVPLSIAMSLDESVNSVNQITQHQLQSTGMEALSELPCEVEIKEMNADTILNTETAVYEPPRKKLKYLETLDIGLQPKAETVSISDTEEETVSKAEHPAKKEEKRTSILEQVLTGNLTMNNHQKLQPKAKLTSEWWCAPCNNYYKTKDSLMKHMQLDCPRVYTCRTCSLSFDSVEVLAKHEASNHLQVKVDFVGNLKDCHQCDRQFASWEMLRQHRLRDHIAELTEIGTNTWCSLCNRFFPTVESYKSHKQLHQTNENLVPQKLQSAESAFSSKIAENPKEGKREEHFYESVKSLTCPTCGKVCTQQSALSNHMRTHEPKRHKCEICGRTFGLFIRLAAHRMAEHNQQPTMSAIEQEEALNAEREAREARNRGIKNKSYPELMEKNDILAEDESSKRNSKNVARCGICLQWFSDHTTMLTHLQTHSDTYSHKSFSCHICKKSFKDHSQLLRHEICHNKRSSLDYVPLYTPNVGNKSHTDKIHQTTHTVDKTYHCAKCNKIFFKEMSFLAHQCTGEPPHANIATAKSVQKTSSHSNNKKYKCSKCEASFLTSQSRNAHMRIHVDNSHGNTAQTPEIKIETDDQEMPKLCPETLVEYNVTPIEPKIEINEQSTPPPLKRTLIKTASGYRCGVCQSPFVSRELAVAHLRSAHPVIPYQCPYCKKRFTTQYIFTHHIKTEHPDEPEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01271455;
90% Identity: iTF_01271455;
80% Identity: -