Pfla001079.1
Basic Information
- Insect
- Pseudomyrmex flavicornis
- Gene Symbol
- -
- Assembly
- GCA_014825475.1
- Location
- QVNW01001629.1:11324-13736[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.9e-05 0.0042 17.8 2.9 1 23 230 252 230 252 0.98 2 11 0.32 34 5.6 11.7 2 23 259 280 258 280 0.91 3 11 4.7e-05 0.005 17.6 6.6 1 23 286 308 286 308 0.99 4 11 0.00032 0.034 15.0 1.6 1 23 314 336 314 336 0.95 5 11 7e-07 7.5e-05 23.3 1.8 1 23 342 364 342 364 0.97 6 11 2.1e-05 0.0022 18.7 1.1 1 23 370 392 370 392 0.97 7 11 6.1e-05 0.0065 17.2 1.6 1 23 397 419 397 419 0.97 8 11 1e-05 0.0011 19.7 0.0 1 23 425 447 425 447 0.96 9 11 6.4e-05 0.0068 17.2 0.1 2 23 459 480 458 480 0.96 10 11 1.2e-06 0.00013 22.6 2.0 1 23 546 568 546 568 0.97 11 11 2e-05 0.0021 18.8 4.6 1 23 578 600 578 600 0.97
Sequence Information
- Coding Sequence
- ATGTGTACTACACCTGGCAATGCTGGCACAGGATTTGGGTATGCTTGGACCTTTAGTGGGCCAGGAACAGAAACCCGTGAGAATACCCAGAACGAACTGGCCACAAATATCAGTTACGCAGTCAACAATAACCAGGATCAAGGATCCAATCAGAAAATACAAGTTGACATTAAGCCTAAGGTTGCCACTACAGCTCATCGTCGTCCAATGTTTGGGATGAACGAAAGTTGTCAACAAACACCTACTACTCATCATGGCCATACAGGCGGAGCACACAATCAAACCACTCATGGTACTCATGTTCGTACTAAGAAGCATCATGATGTATTTTCATTAACGTGCGACAAAGGGGGATGCAATTGCGATGCGGCACATCCTACACCTCCACCTTCTTTATTTCCTAACACTCTAGTTTTTACAACTGACAAACACGCCATGAGCAAGCACTTTATGACACCACTTGGACCATTGCAGTTGACAGCAGAAGAGTGCAATGAGATTTTAATGAAGAGAGCGGCTGCTGCATCAAATCAAGCAAACGCGACAAACAATGTAGCGACGAGTCAAACAGACAGTACCACTCATTTCGGTCATGTTTTGACTCATGTAAACACAACGCAAATTGAGACAAAAGTTAAACAGCAACAAGATATGGGAAGTCAAGTCCGTGTACCGAAAGAACGTCCGTATTCCTGTCCGGAGTGTGGAAAGTCTTTTCTTCTCAAACATCATCTCACAACACACGCAAGAGTTCATACAGGAGAACGACCACATATCTGTATTCATTGTGGCAAGAGTTTTGCGCACAAACATTGTCTTCACACACATCTACTATTGCATAGCGCAGAAAGACCTTATCAATGTCGAGAATGTAAAAAATCTTTCACATTAAAACATCATCTTGTAACACATACTCGCGTGCATACGCGAGAACGACCATTTGTGTGTCAGGAATGCGGAAGAGCATTTCCTCTGAAACGTCATTTAGTGACACACAGTAAGTTTCATTCAGGAGAGAGACCTTATGTTTGCGAAGAGTGCGGCGAGTCGTTTTCTCAAAAGGATCATCTTACAATGCATTCACGCTTCCATGGCAGCTTGCATCCGTTTGTTTGCCATGATTGCGGTGCTACCTTCCAGAGAAAGTTCGAGCTAGTTAATCACGGCCGATTACACGGCAGAGTTCCACATTCGTGTACCGTATGTGGAAAAGAATTTCTGCAGAAAAGAACACTTTTAGCGCATATGCGCTTGCACACAGGTGAAACACCCTTTGCTTGCACCATATGTGGAGAGGCTTTTCCTCGGAAAGCAGATCTAGTAGCTCACTCCAAGATCCACAATAATAATGCAAATACTGATGAAAAGTCTCTCACATGCAGGGAATGTGGGCTGGATTTTGCAAATAGAGAAGCCTTGAATTTACATCAAAGGTTACATACCGGTGACCGGACACTTGTAACAGATCTTTGTGGGCTAGCAGCTGCCTTCCAGCAAACTCCAGCACATTTCCTCACTCCAAACACTCCAACAACTCATCAGATAAACGGGCCAATAGGAACGCCTGGTGTTAGTCATATGCACGGCGCGACGCAAACGTCGCCGCCGGTAGGTACAGGACCAAAACCGAAACCACACATTTGTCCTGATTGCGGTCGCGGCTTCGCACAAAAGCATGGTCTGTCGCAGCATCAGCGACGCCATACAGATGGCAGCTGTCATATAAGATCGCATGTATGTGACAAATGCGGCAAGGCTTTCTTCCAGAAGAATCATTTATTACTACATCAACGTCAGCATATGGATCCGCCACCAACAATACAGTTGAATGTCACCATGTGA
- Protein Sequence
- MCTTPGNAGTGFGYAWTFSGPGTETRENTQNELATNISYAVNNNQDQGSNQKIQVDIKPKVATTAHRRPMFGMNESCQQTPTTHHGHTGGAHNQTTHGTHVRTKKHHDVFSLTCDKGGCNCDAAHPTPPPSLFPNTLVFTTDKHAMSKHFMTPLGPLQLTAEECNEILMKRAAAASNQANATNNVATSQTDSTTHFGHVLTHVNTTQIETKVKQQQDMGSQVRVPKERPYSCPECGKSFLLKHHLTTHARVHTGERPHICIHCGKSFAHKHCLHTHLLLHSAERPYQCRECKKSFTLKHHLVTHTRVHTRERPFVCQECGRAFPLKRHLVTHSKFHSGERPYVCEECGESFSQKDHLTMHSRFHGSLHPFVCHDCGATFQRKFELVNHGRLHGRVPHSCTVCGKEFLQKRTLLAHMRLHTGETPFACTICGEAFPRKADLVAHSKIHNNNANTDEKSLTCRECGLDFANREALNLHQRLHTGDRTLVTDLCGLAAAFQQTPAHFLTPNTPTTHQINGPIGTPGVSHMHGATQTSPPVGTGPKPKPHICPDCGRGFAQKHGLSQHQRRHTDGSCHIRSHVCDKCGKAFFQKNHLLLHQRQHMDPPPTIQLNVTM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00899020;
- 90% Identity
- iTF_00452725;
- 80% Identity
- iTF_01271397;