Pfla013165.1
Basic Information
- Insect
- Pseudomyrmex flavicornis
- Gene Symbol
- ttk
- Assembly
- GCA_014825475.1
- Location
- QVNW01000641.1:6394-7913[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.8e-14 4.1e-11 42.8 0.1 2 42 299 339 298 341 0.93
Sequence Information
- Coding Sequence
- ATGAGTGATCGCTACTGTCTCCGTTGGAACAATCATCAAAGTAACATGATAAGTATTTTCCACGATTTATTAAAGAAAGAAGCTTTTACCGACGTGACTCTTGCTGTGGAAAACCATACTATCAAGTGCCACAAACTGATCCTGGCCGCGTGTTCGCCTTATTTACAAAAACTGCTCGAAGAATCGCCATGCAAACATCCGACGATCATACTCAAAGACATCAAATACACGGATTTGCAGATATTACTCGACTTCATGTATAACGGCGAAGTGAGCATCATGCAGGATCAGCTTGGCAGTCTGCTTAAGACCGCGGAAGTTCTAAAGGTGAAAGGTTTAGTAGATATTAACGGTAAAGATGATTATAGAACCTCGAGCCAGCTCAGGGATGTGTCACCACCGCCCGCCATCAGTACCACAAACAGGGATACAGTAATGGCGTCTAGTAGTAGCGTTCACTCGTCACCGCCGCACTCCACCTTCAGCGATATAAACCAATATTTACCGAGAACCGATGTTTCTTACTTGTATCACTCCCATGCAATAGACTTCAACAGGATAATGTCCGAGACTCATCCGGAGTCCTACAATACCTACAGCTCCTCTGACAATATTCCCTATAATCGAAAATTAGAAGACACGCCTATACTGCGTACGGCACTCGGTCAGAACTCGCCGGTGTTGTCTACTTTCGACAGTGCGTACTATCACATTCGCTACCCTTTGAACAACATCACTTCTAATAGTATAGATCTAACTCACAGAAGAGAAGCACCTCCCAGCCCGCTCGACATGGATGAAGAAGAGAAAAAATCGCCGAAACAGAAAGAGACAACAAAAGAGAAATCAGCAGATCTGCCGAAACCCGAGTGGAAACGATACAAACAGTACAGCCGTGCGGAAATCGATGCGGCGATAACAGCGGTGAGAGAGGGCATGAGCGCGGTGCAAGCAGCTCGTAAGTACAATGTACCGTCGCGCACCCTTTACGATAAGGTAAAGAAACTTGGTATTACGCGGGTCAAACGCTCGTCCACCAATGGCAACAATACGGCAAGTTCTTTTTACGATACCGACGATAACTTGAACGGCATTTATAACACTCCGTCCGAAGCTGACAACGAGAAAGGTTGTAACGTCAAGAAAATACGACAGGATCACGACTCGTCGTCGGACTCTTTTGCGCGTTGCGTTATAAGTCCGGTTATACGTTATGCTACTCAAATGCAGCAGCTAAGTATCAAAGACGAGACGGGGGAGAAGTACGAGGTGGAGGATCTCTCGATGCCGAGTCGTAAGTTAGAGATGCCGGTGACAAAAAAACCCTCCACACCACCGGATAAGATTAAGGAAGAGACGCTGGACACTGATCAGCAATCGGACAACGACCAGAATTAG
- Protein Sequence
- MSDRYCLRWNNHQSNMISIFHDLLKKEAFTDVTLAVENHTIKCHKLILAACSPYLQKLLEESPCKHPTIILKDIKYTDLQILLDFMYNGEVSIMQDQLGSLLKTAEVLKVKGLVDINGKDDYRTSSQLRDVSPPPAISTTNRDTVMASSSSVHSSPPHSTFSDINQYLPRTDVSYLYHSHAIDFNRIMSETHPESYNTYSSSDNIPYNRKLEDTPILRTALGQNSPVLSTFDSAYYHIRYPLNNITSNSIDLTHRREAPPSPLDMDEEEKKSPKQKETTKEKSADLPKPEWKRYKQYSRAEIDAAITAVREGMSAVQAARKYNVPSRTLYDKVKKLGITRVKRSSTNGNNTASSFYDTDDNLNGIYNTPSEADNEKGCNVKKIRQDHDSSSDSFARCVISPVIRYATQMQQLSIKDETGEKYEVEDLSMPSRKLEMPVTKKPSTPPDKIKEETLDTDQQSDNDQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01269888;
- 90% Identity
- iTF_01269888;
- 80% Identity
- iTF_01269888;