Pfla017236.1
Basic Information
- Insect
- Pseudomyrmex flavicornis
- Gene Symbol
- lola
- Assembly
- GCA_014825475.1
- Location
- QVNW01001059.1:578-3040[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.4e-06 0.0015 18.6 0.0 5 37 188 220 185 226 0.84 2 4 1.4e-10 1.5e-07 31.4 0.0 2 40 235 272 234 278 0.89 3 4 0.19 2.1e+02 2.1 0.0 21 34 305 318 291 324 0.80 4 4 1.7e-10 1.9e-07 31.1 0.1 4 38 349 383 346 389 0.90
Sequence Information
- Coding Sequence
- ATGAACGAGCTTACGTGCATGAGGCAGCACGAAGGCAATCACATTTACCGCTTCAAATGGGACGATTATCAAATTCATCTAGCTGATGTTGTGCGACAATTGTTGCAGGAAGATTGTATGGTGGACGTTACACTTTCCGCATCGGGCGAACGTATTCACGCACATCGCATCGTGTTGTGTGCATGTAGCACTTTGTTCCAAGAGATTCTTAGTCAAGTTACAGAAGATGATCCAACCATTATTCTTAGTGACATATCTTCTCAGGATATAAGGTCCATCATTGAATTCATATATCGTGGTGAGGTTCGAGTTCCTGTTGACAATATCAGCAGTTTACTTGAGGCAGCACAGTCATTAAAAATAAGTGGTCTTGTTGATATAAATGGACTTGAGGAAAATCAAAGAATCATAAACAGACAAGATCTTATAGAAAAAAATGCGACAGATGAAACTGAAGAAAATAAATCCAAGAATTTACAAAGTCAACAAACTATTGAGAATAAAAAAAAACGTCAGCACAAGATCCGTGAAAGTGCAAAGAAAGACTACAATGATGGTATGTTACAATCTGCAATTGAAGACTTGAAGAAAGGAATGCCTTTAATAGATGCTGCCACCAAGCACAATATACCTCGCTCAACATTGTACATGCGAGCAAAAGCATTAGATATACATTTAAATGCATCAAGAAATGGATATCCTGAAGAATGTATGAATGCAGCAATGTCTGCTGTAATGAGTGGTTCAAGCTTGCAGCATGCATCGGAGATATATAGGATCCCTAAAACTGTATTATGGAGACGTATGCAGAAAAAAGGCTATCAAATCTTGCGTCCTGAAATGAAGAGATCGTATGCTTTAGACACAAGAGAGGCTGCTGTTAAAGCTTTGGAAAGAGGAGAGAATCTCACAAAAGTCGCACTAGAATTTAAAATACCGAAGACTACATTGTTTAGAGACAAAGCACGATTAGTGAATCAAGGTAAATTACCGTTGTCGTTTTGGAAGAAACGTAAAACGGAGAATGAAGAATTAAAAAAATCGCGTTTGGAAAAAGCTGTGGCTGCCTGCAAAGGTGGTAAAATGTCTCAAGCTGCGGCGTCTATTACATATCAAATTCCGAAAACTACGATATGGCGAAAGCTTCAACAAGATGGGAAAAAAATGGAAAAATCATCAAATATAAAAAAAGAAAAAACGATCGAAAGACAACATGATAATGAGATGAAAACACAAGAAGATTCTAACTTCAACTATTGTGAGGTTTCGTCAGAAATACCTGTAACTTATATAGATGAGAGTAGTATACCTGAGGACTCCGTAATAATCTTGACAACAGAGGATTTAAATGAATTAAATTTAGAAGAAGGAAGACAAATTATTGTAAATTCTGAATCCGGACAAGAATATGTACCATGCGCAATAAGTATTGAACAAAATTCAAATTATTCAGAAGACGCGGGTTAG
- Protein Sequence
- MNELTCMRQHEGNHIYRFKWDDYQIHLADVVRQLLQEDCMVDVTLSASGERIHAHRIVLCACSTLFQEILSQVTEDDPTIILSDISSQDIRSIIEFIYRGEVRVPVDNISSLLEAAQSLKISGLVDINGLEENQRIINRQDLIEKNATDETEENKSKNLQSQQTIENKKKRQHKIRESAKKDYNDGMLQSAIEDLKKGMPLIDAATKHNIPRSTLYMRAKALDIHLNASRNGYPEECMNAAMSAVMSGSSLQHASEIYRIPKTVLWRRMQKKGYQILRPEMKRSYALDTREAAVKALERGENLTKVALEFKIPKTTLFRDKARLVNQGKLPLSFWKKRKTENEELKKSRLEKAVAACKGGKMSQAAASITYQIPKTTIWRKLQQDGKKMEKSSNIKKEKTIERQHDNEMKTQEDSNFNYCEVSSEIPVTYIDESSIPEDSVIILTTEDLNELNLEEGRQIIVNSESGQEYVPCAISIEQNSNYSEDAG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01267677;
- 90% Identity
- iTF_01267677;
- 80% Identity
- iTF_01269907;