Pfla020864.1
Basic Information
- Insect
- Pseudomyrmex flavicornis
- Gene Symbol
- JARID2
- Assembly
- GCA_014825475.1
- Location
- QVNW01001070.1:29043-31350[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.4e-24 3.3e-20 72.7 0.0 6 89 12 93 8 93 0.94
Sequence Information
- Coding Sequence
- ATGCTTCATAGATGGGGTCCTAACGTGAAGGAAATGATGGCTATCAAAAAATATTTAGCTACTCAAAGTATCACTTTGACTCAACCGCCATGGATTGGCGGGATGGAAGTTGATTTACCTCATTTGTATCAAACAGTTCAAAGCTTAGGTGGATTGAAAGAAGTTATAGAAAAAAAGAAATGGCAGAAAGTGGCAGATGGTATGAAGATACCAAAATCTGCACAGGATCGCGTTACTAAACTAGACGATATTTATTGTAAATATTTACTGCCGTATGATACACTATCTCCAGAGGAACGCGGGAAATTGTTCGACGAAGTCGAAGCCGAATGGTTGAAGAAGAAAAATAAAGCTTTGCAAAGACAACAGACACCAACCAATGACAATGACGAAGACGAGGAAGACGACAGTTCCGACGAAATCGAGGAATGCATCGTAAAGGGAAGGAACATGCCTTTGAACGCTTTTTACCGAATTGCTCGTAATACGCAACGTATGTGGTTCGGTGAAAATCAACGGGGAAACGAGGCCGAAGGTGCTTCCGCGGACGAAGTGGAGAGCGCATTTTGGAAACACGTCGCCGAAAGAAAACGCCACGTTTGCGTTCACGCGGCGAGCATCGATTCGAGCGGCCGTGGATTCGGCTTTTCCGTTGCCAAGAACAGTCCGTTCGCCAGGCATTCGTGGAATCTCAAAGTGCTCACCAACAACGCTGGATCAGTACTGAGAGCCTTGGGTCCTTTAATGGGTGTGACTATACCAACGCTCCACGTGGGCATGTTGTTCAGTGCTTGTTGCTGGTATCGCGATCCTCACGGTCTACCGTGGATAGAGTATCTTCATACGGGCGCGAAAAAGATTTGGTACGGAATACCCGACAAGCATAACAACAGTTTCCGAGAGGCGCTCACAAAAATGGTGCCGCAGTATTGCAAAAATAAGACCATATGGTTATCGTCTGACACTGCCATGGTTCCCCCGGAATTATTAGTTAACAACGGTGTGCCGTTGTGCCACACCGTGCAAGAACCGGGACAGTTCATAATCGTGTTTCCGAAAGCGTTCACGTCGAGTATATGCACCGGTTACGTGGTGTCCGAAAGCGTGTATTTTGCGCAACCATCTTGGTTAGAAACTGCTGAGCAAGTATTTAAAGACATACAAGACAGTTGCGAACCTTCTATCTTCTCGTTTGAGAGATTGCTATTTAATATTATTAACGATACAAGATCTCACGTAGACATATTAAAACAGATACTACCAAGCGTGATAAAGATTCGTCTGAAGGAGTTGGATTACCGCAAACAACTGACAAACGCAGGTCTTACTAAGAGGGAAAGATTACCACTGCCAAATAGCGGGAAAGGGAAGAGAGGGAAAAAGGTGAAAGAAGACGACGGTGATTTTGAATGTGAATCGTGTAGAGCTAACTTGTTTGTTTCGTTGGTGAATAATTCGCAAGAAGACAGCGTTTATTGTCTACCGCATGGGTTGCAGTTAATCAATCGTAAAAAGCAAGTTTTGAAACATTGCACTCTCATGTACACGTACGACGAAGATGAATTAGATGAATTGATTCACAAACTGGAAAACAGGATCGAAGCCAAATCTAAGAAAACTAATCAAATAAAACAAGTTAAGTAA
- Protein Sequence
- MLHRWGPNVKEMMAIKKYLATQSITLTQPPWIGGMEVDLPHLYQTVQSLGGLKEVIEKKKWQKVADGMKIPKSAQDRVTKLDDIYCKYLLPYDTLSPEERGKLFDEVEAEWLKKKNKALQRQQTPTNDNDEDEEDDSSDEIEECIVKGRNMPLNAFYRIARNTQRMWFGENQRGNEAEGASADEVESAFWKHVAERKRHVCVHAASIDSSGRGFGFSVAKNSPFARHSWNLKVLTNNAGSVLRALGPLMGVTIPTLHVGMLFSACCWYRDPHGLPWIEYLHTGAKKIWYGIPDKHNNSFREALTKMVPQYCKNKTIWLSSDTAMVPPELLVNNGVPLCHTVQEPGQFIIVFPKAFTSSICTGYVVSESVYFAQPSWLETAEQVFKDIQDSCEPSIFSFERLLFNIINDTRSHVDILKQILPSVIKIRLKELDYRKQLTNAGLTKRERLPLPNSGKGKRGKKVKEDDGDFECESCRANLFVSLVNNSQEDSVYCLPHGLQLINRKKQVLKHCTLMYTYDEDELDELIHKLENRIEAKSKKTNQIKQVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00676482; iTF_01389209;
- 90% Identity
- -
- 80% Identity
- -