Pelo040641.1
Basic Information
- Insect
- Pseudomyrmex elongatus
- Gene Symbol
- NFXL1
- Assembly
- GCA_014825605.1
- Location
- QVNY01020124.1:1-1574[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.1 1.7e+03 0.6 0.7 4 10 217 223 216 224 0.94 2 11 0.0021 35 6.0 17.4 4 18 232 246 230 247 0.93 3 11 0.3 5e+03 -0.9 1.2 8 13 253 258 252 259 0.80 4 11 0.25 4.2e+03 -0.7 0.2 1 4 257 260 257 261 0.89 5 11 0.91 1.5e+04 -2.5 0.9 6 10 277 281 276 281 0.88 6 11 3.7e-08 0.00062 21.2 15.4 1 18 287 304 287 305 0.98 7 11 2.4 4e+04 -3.8 1.1 1 7 350 355 350 356 0.58 8 11 0.00021 3.5 9.2 4.8 1 12 360 371 360 373 0.90 9 11 1.4 2.4e+04 -3.1 1.3 5 10 413 418 413 418 0.90 10 11 5.8e-09 9.7e-05 23.7 15.5 1 19 424 441 424 441 0.98 11 11 0.0099 1.7e+02 3.8 13.6 1 14 479 492 479 492 0.96
Sequence Information
- Coding Sequence
- CGAGGCGGGAGGAGGAATAGACGAGGAGGCCAACGAAGGGAAGGTGGAGGGAGAGCGGAAGGCAGAGGAGGCTCTAGTGCAGAGCCTCAAGTTTCCTTCCGAGCCGGCGCTCAACGTCGGTTTGGAGGACATTTGACGACTTCCTCTACCAACGAGACCACCACCCTCACAGCACAAGCACCAGAGTTTGTCCCTGGACAACCTTACACTCCCGCAAGCTCAGAGCAACTTCAATCCTCTGCCCAGCCTCAGCCCCTCTCTGCTGGCCCCAACTCGCAGCCCCGACAACGTCGGCGGCAGCGGAAACCAAAAGCTGAACGTGAACGCCCAACAGCGCCAAAGTCTACAAGACCAGAAATGTGGGAACGGATTCAGGAAGATATTGCCAATTTCAACTATGAATGCAGGATATGCACCGAGGAAGTTACTCGCAAATCTGAAGTCTGGTCTTGTACCATTTGCTGGAGCGTGGTTCATCTCCAGTGCGCCCAAGACTGGTTCGACACATCTCAGAGAACGACTGAGACCGATGGAGTCGTCTGGCGTTGCCCTGGATGCAACTCTCAACTTACGGAGGAGCCAAGTGCCTACTTTTGCTGGTGCAAGAAGGAAATCAACCCCAGTCAAACCAGCACTCTGGTACCTCCTCACTCATGTGGACAGACTTGTTCGAAGCCTCGAACAACTTGCCCGCATCCTTGCCCGCTTCAATGTCACGCTGGGCCTTGCCCTACGTGTGAAGTTGTCACACCACCAGAGCCGTGTCATTGTGGAAGGCATGAGAGTCGCCTCCGCTGCAAGGATACCGACATCACCAATGGCTGGAGCTGCAAGGAGATCTGTGGCGATTTACTCCCTTGCGGAGAGCACGAGTGTCAAGAGCCTTGCCATCCAGGCGTTTGTAATCCATGTATGGTGCAAGTCAAGGCTCGATGTTATTGCGGAAAAATGGAGAAAGAAATGCCTTGTTTCGAGAGGTATGAACACGGAGACCCCCAGGATTCTTATTCTGTCGACAGCAAGGATTGGTTCACAGGTTATTTTGATTGTGGAAACACATGCGAGAGGGCATACGACTGCAGTGTTCATCGTTGCCAGCTGACCTGCCATGGCCAAGACGAGGAACCGGCTCACTGTCCATTTGCCCCCGATGTCGTGCTCACCTGCCCTTGCGGTAAGACGCCGCTGGGAGCCTTGCTTGAAGCGCCTCGACAGACCTGCGAGGATGAGATTCCTCGTTGTGCTCAAAAATGCGAGAAGAAGCTCCCCTGTGGCCACACTTGCGAAGCCTCTTGTCACACAGGAGACTGTCCTCCTTGTAGCAAGATGATAGATATTGAATGCCGTTGTGGCAGGACGACGAGCAAGATCATCTGTTTTGCAGGCGAGATCGAACGACCTTGGTGTCTCAGGGTGTGTCAGGCTACGAAGAACTGTGGACGCCATCGCTGCGGTGAGCATTGCTGCCCCGGCGAGAAGAAGGCACAGTTGCGAGTCGCTCAGAAGAAGAAACACCGCCGAG
- Protein Sequence
- RGGRRNRRGGQRREGGGRAEGRGGSSAEPQVSFRAGAQRRFGGHLTTSSTNETTTLTAQAPEFVPGQPYTPASSEQLQSSAQPQPLSAGPNSQPRQRRRQRKPKAERERPTAPKSTRPEMWERIQEDIANFNYECRICTEEVTRKSEVWSCTICWSVVHLQCAQDWFDTSQRTTETDGVVWRCPGCNSQLTEEPSAYFCWCKKEINPSQTSTLVPPHSCGQTCSKPRTTCPHPCPLQCHAGPCPTCEVVTPPEPCHCGRHESRLRCKDTDITNGWSCKEICGDLLPCGEHECQEPCHPGVCNPCMVQVKARCYCGKMEKEMPCFERYEHGDPQDSYSVDSKDWFTGYFDCGNTCERAYDCSVHRCQLTCHGQDEEPAHCPFAPDVVLTCPCGKTPLGALLEAPRQTCEDEIPRCAQKCEKKLPCGHTCEASCHTGDCPPCSKMIDIECRCGRTTSKIICFAGEIERPWCLRVCQATKNCGRHRCGEHCCPGEKKAQLRVAQKKKHRR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -