Pelo023265.1
Basic Information
- Insect
- Pseudomyrmex elongatus
- Gene Symbol
- -
- Assembly
- GCA_014825605.1
- Location
- QVNY01003928.1:45349-48508[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.16 32 6.6 0.2 6 21 261 276 258 277 0.90 2 12 0.018 3.7 9.6 0.2 1 23 283 306 283 306 0.94 3 12 0.00014 0.029 16.2 1.6 3 23 320 341 319 341 0.96 4 12 0.01 2.1 10.4 1.7 2 23 353 374 352 374 0.96 5 12 9.5e-08 1.9e-05 26.2 1.5 2 23 419 440 418 440 0.97 6 12 0.011 2.2 10.3 0.3 1 23 445 468 445 468 0.87 7 12 0.99 2e+02 4.1 1.6 2 23 527 548 527 548 0.96 8 12 1.5e-05 0.003 19.3 2.6 1 19 557 575 557 577 0.96 9 12 0.18 37 6.5 3.7 1 22 615 636 615 636 0.95 10 12 0.0026 0.52 12.3 1.0 1 23 662 684 662 684 0.99 11 12 0.016 3.4 9.7 0.0 1 23 748 771 748 771 0.98 12 12 3.1e-05 0.0063 18.3 5.0 1 23 776 799 776 799 0.98
Sequence Information
- Coding Sequence
- ATGGCTCCTATAGACAGGTGGGACAATGCCTGTAGATTGTGTTCGGAAGAAAAGAACGAGATGTTGCCCATTTTCGGCGATGAAGGCATGCAGCGCAGGGTGGTGCACAAACTGCGCGCCATTCTGCCAGTATTGGTTTACAAAACCGATCCGTTGCCCAAGCAGATTTGCCAGTTTTGCGCAGCTAGGCTGGACGATGCTTATCAATTTAGGGAGTATTGCCTGAATGTCTACAGGAATATGCACGCTGCATTGCTGGGTTATAAGAAGATTGAATCTGTACAGACTTTTTTCAATGCAATGAAGAACTCACCGGATCCATGTCAGTCACAGCTTTGCAAGGAGAAGTCAAGAGCTCCACCTCCATTAGTTCCTTTATCAATTGCCATGTCTCTTGATGAGTCAGTGAATTCTGTAAACCAAATTATTCAACATCAGCTCCAAAGTACTGGCATGGAAGCCCTGTCTGAACTACCATGTGAGGTAGAGATCAAGGAGATGAATGCAGATACAATTTTGAATACTGAAACTGTTTATGAACCATCGTGTAAAAAACTCAAATATTTAGAAACACTTGACATAGGTTTACAACCAAACACGGAGACTGTTTCTATATCTGATACAGAAGAAGAAACAGTTTCCAAGGCAGAACATTCAGCAAAAAAAGAAGAGAAGCGGACCAGCATTTTGGAACAAGTACTGACTGGTAATTTAACAATGAATAATCATCAGAAGCTGCAACCTAAAACAAAATTAACATCTGAATGGTGGTGTGCACCTTGCAACAATTATTATAAAACGAAAGATAGTCTAATGAAACACATGCAATTAGACTGTCCACGTGTATATACTTGTAGAACATGTTCTTTATCTTTTGATTCCGTCGAAGGTCTGGCAAAGCATGAAGCTAGTAATCATTTACAAGTCAAAGTAGATTTTGTTGGCAACTTGAAAGATTGTCATCAGTGTGACCGACAATTTGCAAGTTGGGAAATGTTAAGACAGCATAGATTACGGGATCATATCGCCGAATTAACTGAGATTGGAACTAACACAAGGTGTTCACTGTGCAATAGATTCTTTCCTACTGTAGAGAGTTATAAAAGTCACAAGCAATTGCATCAAACCAATGAAAATTTAATCCCGCAAAAACTGCAATCCGCAGAATCTGGATTTTCATCAACATCAAAGATAGCGGAAAATCTGAAAGAAGGTAAACGAGAAGAACACTTCTATGAAAATGTGAAGTCTCTTACATGTCCCACCTGTGGAAAGGTTTGCACCCAGCAAAGTGCATTGTCAAATCATATGCGCACTCACGAGCCAAAAAGACACAAATGCGAGATTTGTGGCCGGACATTTGGACTTTTTATACGCTTAGCGGCTCACAGAATGGCCGAGCATAATCAGCAGCCAACTATGTCGGCAATCGAGCAAGAAGAAGCATTAAATGCAGAAAGGGAAGCGAGAGAAGCTAGGAATCGTGGTATCAAGAATAAGTCTTATCCTGAGCTAATAGAGAAGAACGATATTTTGGCGGAAGATGAGTCCTCAAAGCGCAATTCTAAGAACGTAGCAAGATGTGGCATTTGTCTACAGTGGTTTAGCGATCACACGACAATGTTGACACATCTTCAGACACACTCGGATACTTATTCCCATAAAAACTTTTCTTGTCATATATGTAAAAAGTCATTTAAGGACCATAGCCAGCTGTTAAGACACGAAGTATGTCACAATAAACGTTCATCTCTCGATTATGTCCCAATGTACACACCTAATGTTGGAAACAAATCGCTTACGGACAAAACTCATCAAACGACACACACGGTGGATAAGACTTATCATTGCGCAAAGTGTAATAAAATCTTTTTCAAAGAAATGTCATTCCTTGCTCATCAATGTACAGGTGAACCACCTCATGCAAATATAGCCACTGCCAAATCTGTACAGAAGACGTCGTCTCACAGTAATAATAAGAGATACAAGTGTTCCAAATGTGAGGCGTCATTTCTAACTTCACAGTCCCGAAATGCTCATATGAGAATACACGTCGACAACTCGCATAGCAATACGGCACAGACACCAGAGATAAAGATTGAAACAGATGATCAAGAGATGCCAAAATTGTGTCCGGAAACAGTGGAGTACAATGTAACCCCCATCGAGCCAAAAATTGAAATTAACGAGCAAAGTACACCTCCGCCTCTTAAACGGACTTTAATTAAAACCGCTAGCGGATATCGATGCGGTGTATGTCAATCACCATTCGTGTCTAGAGAGTTAGCAGTAGCACATTTGAGGTCTGCACATCCCATGATACCGTATCAGTGCCCTTATTGTAAAAAGCGCTTCACGACGCAGTACATTTTTACTCATCACATTAAAACGGAACATCCTGACGAACCCGAGAAATAG
- Protein Sequence
- MAPIDRWDNACRLCSEEKNEMLPIFGDEGMQRRVVHKLRAILPVLVYKTDPLPKQICQFCAARLDDAYQFREYCLNVYRNMHAALLGYKKIESVQTFFNAMKNSPDPCQSQLCKEKSRAPPPLVPLSIAMSLDESVNSVNQIIQHQLQSTGMEALSELPCEVEIKEMNADTILNTETVYEPSCKKLKYLETLDIGLQPNTETVSISDTEEETVSKAEHSAKKEEKRTSILEQVLTGNLTMNNHQKLQPKTKLTSEWWCAPCNNYYKTKDSLMKHMQLDCPRVYTCRTCSLSFDSVEGLAKHEASNHLQVKVDFVGNLKDCHQCDRQFASWEMLRQHRLRDHIAELTEIGTNTRCSLCNRFFPTVESYKSHKQLHQTNENLIPQKLQSAESGFSSTSKIAENLKEGKREEHFYENVKSLTCPTCGKVCTQQSALSNHMRTHEPKRHKCEICGRTFGLFIRLAAHRMAEHNQQPTMSAIEQEEALNAEREAREARNRGIKNKSYPELIEKNDILAEDESSKRNSKNVARCGICLQWFSDHTTMLTHLQTHSDTYSHKNFSCHICKKSFKDHSQLLRHEVCHNKRSSLDYVPMYTPNVGNKSLTDKTHQTTHTVDKTYHCAKCNKIFFKEMSFLAHQCTGEPPHANIATAKSVQKTSSHSNNKRYKCSKCEASFLTSQSRNAHMRIHVDNSHSNTAQTPEIKIETDDQEMPKLCPETVEYNVTPIEPKIEINEQSTPPPLKRTLIKTASGYRCGVCQSPFVSRELAVAHLRSAHPMIPYQCPYCKKRFTTQYIFTHHIKTEHPDEPEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01271455;
- 90% Identity
- iTF_01271455;
- 80% Identity
- -