Basic Information

Insect: Pseudomyrmex elongatus
Gene Symbol: topi
Assembly: GCA_014825605.1
Location: QVNY01020207.1:31351-33638[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.016 3.2 9.8 0.7 1 23 246 268 246 268 0.95

2 16 0.053 11 8.1 1.2 2 23 275 297 274 297 0.95

3 16 0.0004 0.082 14.8 0.7 1 22 303 324 303 324 0.95

4 16 5.6e-05 0.012 17.5 0.4 1 23 331 353 331 353 0.96

5 16 2.5e-06 0.00051 21.8 3.0 1 23 359 381 359 381 0.97

6 16 0.046 9.5 8.3 0.2 2 23 393 415 392 415 0.86

7 16 0.0056 1.1 11.2 2.3 1 23 431 453 431 453 0.98

8 16 0.07 14 7.8 0.6 1 23 459 481 459 481 0.96

9 16 0.73 1.5e+02 4.6 1.5 1 23 491 514 491 514 0.93

10 16 0.04 8.1 8.5 0.0 1 21 528 548 528 549 0.93

11 16 0.0052 1.1 11.3 0.1 1 23 554 576 554 576 0.98

12 16 1.1e-06 0.00023 22.8 3.0 1 23 582 604 582 604 0.98

13 16 2e-05 0.0042 18.9 0.3 1 23 610 633 610 633 0.98

14 16 0.057 12 8.0 0.7 1 23 639 661 639 661 0.89

15 16 3.7e-07 7.6e-05 24.4 2.2 1 23 667 689 667 689 0.99

16 16 7.1e-06 0.0014 20.3 5.1 1 23 695 718 695 718 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.016	3.2	9.8	0.7	1	23	246	268	246	268	0.95
2	16	0.053	11	8.1	1.2	2	23	275	297	274	297	0.95
3	16	0.0004	0.082	14.8	0.7	1	22	303	324	303	324	0.95
4	16	5.6e-05	0.012	17.5	0.4	1	23	331	353	331	353	0.96
5	16	2.5e-06	0.00051	21.8	3.0	1	23	359	381	359	381	0.97
6	16	0.046	9.5	8.3	0.2	2	23	393	415	392	415	0.86
7	16	0.0056	1.1	11.2	2.3	1	23	431	453	431	453	0.98
8	16	0.07	14	7.8	0.6	1	23	459	481	459	481	0.96
9	16	0.73	1.5e+02	4.6	1.5	1	23	491	514	491	514	0.93
10	16	0.04	8.1	8.5	0.0	1	21	528	548	528	549	0.93
11	16	0.0052	1.1	11.3	0.1	1	23	554	576	554	576	0.98
12	16	1.1e-06	0.00023	22.8	3.0	1	23	582	604	582	604	0.98
13	16	2e-05	0.0042	18.9	0.3	1	23	610	633	610	633	0.98
14	16	0.057	12	8.0	0.7	1	23	639	661	639	661	0.89
15	16	3.7e-07	7.6e-05	24.4	2.2	1	23	667	689	667	689	0.99
16	16	7.1e-06	0.0014	20.3	5.1	1	23	695	718	695	718	0.96

Sequence Information

Coding Sequence: ATGTTAAGAGCAGAATCAATTAGCACACTAAGGAACTACGAAGATGATGTTAACGATTTAGATGGCTCTATTATATGGTCTCAAGAGGAGCCATTGTCATCTAATGAAATATTGATGCTGCTAAGTGAAGATCAAAGAGAAAACAATTTGGCTGCGTTCTGCCGATTGTGTGCTAATCAAACTAATAATCCAATAAATATTTATTCTGAACTTGGAGAATCCATGAAATTAGAGCATAAAATAAACACATATCTAAGCATCAAGATTAGAAAAACAGATCTGTTGTCAAAACAACTTTGTCTGTCTTGTATTGAGAAGATAAACTGGTGCAACGAATTTGACACTCAGTGCGTCAAAGCAGAAGAAATTTTGTTGACAATGCTACGAGAAAAACAACAATCTTTCAATATCAGTCATGAAAATAAAATCTTATCTGATCAACAATCCTGTCTTTTATGTACAGAAGATTCTATGAACACATGTGAAGACACTTCCCAAGATACAAAAAGTATGGAAGTGTATGAAAACATTATTATTCTTGAGAAGAGTGATGAAGAGAACATTGGTAATATTGCAAAAGTTGAGAAGGAAAACAGAGATTATTCTATCGTGCTACAATATCTGGGAGATAAACAAAAATATTTGAAATGCGGAGCATGCATGAATCTCTATCACACTCAGGAGACTCTAGACAGTCACAAGTGTAAGCCACATGCCCAGAGCACGACACAGCTATACGAGTGTTCTATGTGCGGCTTGACGTTTGCCTTTGAGGAACGACTAAACTTTCACATGCAATTTCACAAGGATGGAAAAGCACTGTATTGTGAAGTCTGCAAACTGACGTTTGCCAAAGAATTAAAGCTGTTTTATCATTACAAAAGATATCATTCCAGTGATATTAGCTTCTCATGTTTGCAATGCGGAAAGCTATTCGAGAACCAGAATGCGCTTCGAGTGCACATCTGTACCGACGGCAAGACTCGGCCGCACATCTGCGAAGTGTGCAACAAGGGCTTTACGGATGGTTATGCTTTGAAGCGTCACGTAGTAACGCACTTGCCGGAGAAGCCGTTTAAATGTTCGCAGTGCTCGAAGAGCTTTACGCAGAAGTCGAGATTGAACAAACATATCGCAAATCATTGCATCGTCATCGAAGACAGCCAGACGGTCTGGAAATGCGTCCAGTGTGGCGAGGTGTTTGTCTCCTGCGACAACGCCGATGTACATTATTACGAAATACACGAGGAAAAAATCACGCTGATTGAGGAACTGTTGATATCGAGGATTTATCATTGTGAGTTCTGCAACAGTTACTTCGCCGATGTGGACAATCTAAGTTCTCATCAAAATAAACATGTTATCGAGAGACCGTACACGTGTAACACCTGCAAAACCATTTACAAATCTTTCGGGGAAGCTGTTACGCATTGGAAGGAACATCCTAGACTCTTCAGAGTTCTCATCTTCTTCTTATGCGACATTTGCTACAAAGACATGAAGGAACTGTCATTGTTGTACAAACACAAGCAGAAGAGACACGGTTACGCGTCGAGATTGTCCGAGTCCGGTGACTCCAAGTTCATTTGCCAGCTCTGCGGAAATGTGTTCGATAAAAGCGAGGATATACAGAATCACGGACGGGAACAATGCTCGAAATTTCCTTGCGATATCTGCGGCAGTCTACTGCCCACCGCAAACTCGCTGAACGCTCATAAGAGACGGCACAATGGATTAAGACCGTACGTTTGCAACATCTGCGGAAAAAGTTACACTCAGTCCAGCCACATGTGGACTCACAGGAGATTTCACATGGGCGTAAAACCTTACGTTTGTGATTACTGCGATCAGCGTTTCACGATAAAGCCGGATCTGGCGGATCACATCAGAAAGAAGCACACCAAGGAGAGACCGTTCAAATGCGACGTGTGCAACAAGGCCTTCCTGACTGGTTCTGTATTTTATCAGCATAGATTGATACATCGTGGTGATCGCAGATACAAATGTCATTATTGTGAGAAGGCTTTCACTAGAACAGAAGCTTTAAATAATCACATCAAAATACACACCGGAGAAAAGCCGCACGCTTGCGATGTGTGCGGCAGATGTTTCAGACAGAAGGGAGATATGAAAAAACACAGACGCACGCAGCATAGCTCTAGTCAAGAGATTTCTGAAAGTTGTCATGTTCCAGATGTAGCATAA
Protein Sequence: MLRAESISTLRNYEDDVNDLDGSIIWSQEEPLSSNEILMLLSEDQRENNLAAFCRLCANQTNNPINIYSELGESMKLEHKINTYLSIKIRKTDLLSKQLCLSCIEKINWCNEFDTQCVKAEEILLTMLREKQQSFNISHENKILSDQQSCLLCTEDSMNTCEDTSQDTKSMEVYENIIILEKSDEENIGNIAKVEKENRDYSIVLQYLGDKQKYLKCGACMNLYHTQETLDSHKCKPHAQSTTQLYECSMCGLTFAFEERLNFHMQFHKDGKALYCEVCKLTFAKELKLFYHYKRYHSSDISFSCLQCGKLFENQNALRVHICTDGKTRPHICEVCNKGFTDGYALKRHVVTHLPEKPFKCSQCSKSFTQKSRLNKHIANHCIVIEDSQTVWKCVQCGEVFVSCDNADVHYYEIHEEKITLIEELLISRIYHCEFCNSYFADVDNLSSHQNKHVIERPYTCNTCKTIYKSFGEAVTHWKEHPRLFRVLIFFLCDICYKDMKELSLLYKHKQKRHGYASRLSESGDSKFICQLCGNVFDKSEDIQNHGREQCSKFPCDICGSLLPTANSLNAHKRRHNGLRPYVCNICGKSYTQSSHMWTHRRFHMGVKPYVCDYCDQRFTIKPDLADHIRKKHTKERPFKCDVCNKAFLTGSVFYQHRLIHRGDRRYKCHYCEKAFTRTEALNNHIKIHTGEKPHACDVCGRCFRQKGDMKKHRRTQHSSSQEISESCHVPDVA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01269970; iTF_01270690; iTF_01268456; iTF_01271400; iTF_01267019; iTF_01267734;
90% Identity: iTF_01270690; iTF_01267019; iTF_01268456; iTF_01271400; iTF_01269970; iTF_01267734;
80% Identity: -