Basic Information

Insect: Pseudomyrmex elongatus
Gene Symbol: -
Assembly: GCA_014825605.1
Location: QVNY01025681.1:1519-4504[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2.6e-05 0.0053 18.6 5.1 1 23 266 288 266 288 0.99

2 12 1.2 2.5e+02 3.8 2.3 1 10 292 301 292 315 0.74

3 12 4e-05 0.0081 18.0 0.9 2 23 325 346 325 346 0.97

4 12 4.3e-07 8.8e-05 24.2 2.1 1 23 437 459 437 459 0.98

5 12 0.00035 0.072 15.0 2.1 1 22 464 485 464 488 0.91

6 12 1.3e-05 0.0026 19.5 0.9 1 23 527 550 527 550 0.93

7 12 1e-06 0.00021 22.9 0.9 1 23 584 606 584 606 0.99

8 12 0.00018 0.037 15.9 4.0 1 23 620 642 620 642 0.96

9 12 0.00017 0.035 16.0 4.7 1 23 648 670 648 670 0.98

10 12 0.00027 0.055 15.4 1.4 1 23 676 698 676 698 0.98

11 12 5.2e-05 0.011 17.6 6.5 1 23 704 726 704 726 0.98

12 12 0.00024 0.049 15.5 0.3 1 21 732 752 732 753 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2.6e-05	0.0053	18.6	5.1	1	23	266	288	266	288	0.99
2	12	1.2	2.5e+02	3.8	2.3	1	10	292	301	292	315	0.74
3	12	4e-05	0.0081	18.0	0.9	2	23	325	346	325	346	0.97
4	12	4.3e-07	8.8e-05	24.2	2.1	1	23	437	459	437	459	0.98
5	12	0.00035	0.072	15.0	2.1	1	22	464	485	464	488	0.91
6	12	1.3e-05	0.0026	19.5	0.9	1	23	527	550	527	550	0.93
7	12	1e-06	0.00021	22.9	0.9	1	23	584	606	584	606	0.99
8	12	0.00018	0.037	15.9	4.0	1	23	620	642	620	642	0.96
9	12	0.00017	0.035	16.0	4.7	1	23	648	670	648	670	0.98
10	12	0.00027	0.055	15.4	1.4	1	23	676	698	676	698	0.98
11	12	5.2e-05	0.011	17.6	6.5	1	23	704	726	704	726	0.98
12	12	0.00024	0.049	15.5	0.3	1	21	732	752	732	753	0.93

Sequence Information

Coding Sequence: ATGCAGGTTGACGACGAGATGTTGATGCGAGCGAATCGAGACATCAATTTGTGTCGCGTCTGTCTGACCGTGGATTACAACAACCAGTGCATCTTCCGCAGGAACCTCGACGATCCAAACGGCGCGAGCATTTCTGAACTGTCAGAGAAGCTGCAACTGTGCGGCGGAGTGGAGGTTTTAGAAGATGATGGTTTACCTGCTGGTATCTGTGTCAAATGTTTGATGAAAGTTAATATTGCCTATGAATTGAGAGAACAGTGTCAAAAAGCAGATATGCAATTGAGAAAGCTGTATGGAAAAGCCTTGAAGAAGAATGTCAGCAACTCCGTTTCTACAAGAGATCAGTATTGTCAAACTGAACAAGTTTTCACTTTGAATGCAATTAAATTAGAAAATAATATCGAGTTAAATGTGGATGGTGGAAGTATCACACAAAAGAATGTCAACACAATGAACTTAGATACACCAGACGTTTTTAGTGAGAACAATCATACAGAAGATATTGTTGATAATGAATTAGATGTAGACTGTAATAATAGATCTAAACAAGTAGGACAAGGAAAAGTAGCTAAAAAAGAAGCTTGCAGAACAAGAAGGTTAACTGTGTTTAAGAGAGTCACGTCTATGGAGAATCTGAGAAATTATAAAGAAATGCAGAGAAGATACATCAAAAAGAGCGCAAATGTCAAATGCGACACCAACGATGGCGAGTGTCAAACAAAGCCGAAGATTAATTGCAACAGAGTGGACAAAACATCCGAATTGTCTGATTTGTTCTCTGAATTCGAGTCGCAATACAAATGTTCAACATGTGATAAATGTTATTCCAGTAAAAAATCTTTAGATAGACACGTGTCAACTCATAACAAAGAGTTCAAATGCGATAACTGTGATAAGCAATTTCTCTGTCTGGACAAACTACTTAAGCACAAAGAGAACGTGCACAAGGCGAAGGAGAAGCCGCAACCGGCGGTGTGCAATATCTGTAACAAAAGTTTCAGAAAGACCGACACCATGGTCAGACATTTGAATGTTCACAAGCGAGCGAATCCCAAGGAAGTTTTTTCCATATTGAAAGAAATGCGGGACAGAAGAAAATTAGAGAACAGTCGCAAGTTATCCGAGATGCTTCACGTCGATGCGGATGAAGATGAAGAAATGATTCTCGAGGAGAAATCACAGAGCGAGAACGACGGTACGACGAGAGAATTGAGGAAACGCGTGATAAAAGCGGAGCAAAGAGATTCGGATTTAGGTAACAGCGACACCAGCAGCGACAAATTCGACTCTTTCGACGACACGGCGCTTTTTCAGTGCAAGAACTGCAACAAGAGTTACTCCACCGAGAGATCGCTACAACGTCATATGTTGGTGCACGACGAGAAGAAATTCGTTTGCAATTTTTGCAACATGAAATTCTACCGGCAGGATCGGCTGAAGAGTCACATGGAAAGGTACGGCCACGACGAGACCAAAGCGTCTTCGGAGCCGCAGAAACCGCCCGACGACAAATCGGCCATCAAGCTGATCAACAGCTGGATAAGAGAGGAACTGGATTCCGATAACGAGGGCAAGGGCTTTCCTTGCAAGACCTGCGGAAAGTCGTACGACACGAAGAAATCTCTGCTGAAGCATCAAGTTAACGCGCACAGCGAACAGAACGAGTACTGCGCGAACTGCGACGGCGTGTGCAACTGCGCGGACGGGAAAATCAAGGAATCGGAGAAGAGCGCGGAGAAATCGAAGCCGTACACGTGCGAAGAATGCAACAAGTCTTTCGAGAAGGAGGTGAAGCTGCAGAGGCATCTGCGGATTCACGAGCGCGCCAAGGAGCAACAGGATGCGAACTTCAAGCGCTTCCTTTGTCACATATGCAGCAAGACGTTCCGCCAGAACACCGGTCTGATGTTCCACATGCGCACTCACACGGGCTACAAGCCGCACGTGTGCAAGTACTGCGGCCGCGGTTTCACGTCCAATTCGAACTGCATCAATCACGAGAGGACGCACACCGGCGATCGGCCGTTCGTCTGTCAGTACTGCAGCGCGGCGTTTGCCAAATCGTGCACCCTCAAGGCCCACATCACCACGCACACCGGCGAGGCGAATTATCACTGCAAGACCTGCGGCAAGTCGTTTCGCCGGCTCAAGTATCTGAAGGAGCATCGATTCACGCACACGGGCGAGAAACCGTACGCGTGCAAGATCTGCGGCACCGCGTACAGCCACTCCGGCAGTCTTTTCGTGCACGAGAAGAAGTGCAAAGCGCAGTACAGCAATTATCAACCGGTGGCAGCGGCGCAGAACAACGTGGTGCAACAGCAGCCACCGTACGGTCAGTCGCCGCAAAGCGGCATCTCCGCGACGTCCCCCTCGTCGGTTATCACTCCTATCATCACCACGCTGCCCCAGGCGCACTTAAACGTCATCAACAGCACTTTGAATGTGCAGAACAAGAACTACATGGACAACGTTCAGAGAATGAACGTTCACACAGCGGCCACAACGACCACGGTCGTTTCACCGGGTTTGCACGCGAACGCCGCCGACATTCCCGAGATGAGTTCCACCGTTTCGTACGTCGGAAGGTACGAGCAAAAGGCGAATCAAGACTCTACTGTGATAAAAATATCTTTTTTTTAA
Protein Sequence: MQVDDEMLMRANRDINLCRVCLTVDYNNQCIFRRNLDDPNGASISELSEKLQLCGGVEVLEDDGLPAGICVKCLMKVNIAYELREQCQKADMQLRKLYGKALKKNVSNSVSTRDQYCQTEQVFTLNAIKLENNIELNVDGGSITQKNVNTMNLDTPDVFSENNHTEDIVDNELDVDCNNRSKQVGQGKVAKKEACRTRRLTVFKRVTSMENLRNYKEMQRRYIKKSANVKCDTNDGECQTKPKINCNRVDKTSELSDLFSEFESQYKCSTCDKCYSSKKSLDRHVSTHNKEFKCDNCDKQFLCLDKLLKHKENVHKAKEKPQPAVCNICNKSFRKTDTMVRHLNVHKRANPKEVFSILKEMRDRRKLENSRKLSEMLHVDADEDEEMILEEKSQSENDGTTRELRKRVIKAEQRDSDLGNSDTSSDKFDSFDDTALFQCKNCNKSYSTERSLQRHMLVHDEKKFVCNFCNMKFYRQDRLKSHMERYGHDETKASSEPQKPPDDKSAIKLINSWIREELDSDNEGKGFPCKTCGKSYDTKKSLLKHQVNAHSEQNEYCANCDGVCNCADGKIKESEKSAEKSKPYTCEECNKSFEKEVKLQRHLRIHERAKEQQDANFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCQYCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHRFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQYSNYQPVAAAQNNVVQQQPPYGQSPQSGISATSPSSVITPIITTLPQAHLNVINSTLNVQNKNYMDNVQRMNVHTAATTTTVVSPGLHANAADIPEMSSTVSYVGRYEQKANQDSTVIKISFF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01268448;
90% Identity: iTF_01271398;
80% Identity: -