Basic Information

Insect: Pseudomyrmex elongatus
Gene Symbol: ZNF236
Assembly: GCA_014825605.1
Location: QVNY01024860.1:210-7515[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.5e-05 0.0031 19.3 0.6 2 23 182 203 181 203 0.96

2 12 0.00026 0.052 15.4 0.4 1 23 209 231 209 231 0.98

3 12 1.2e-05 0.0024 19.7 0.3 2 23 237 258 237 258 0.97

4 12 0.017 3.6 9.7 0.1 3 23 266 286 264 286 0.95

5 12 5.8e-05 0.012 17.5 0.6 2 23 299 320 299 320 0.98

6 12 1.3e-06 0.00026 22.7 1.4 1 23 341 363 341 363 0.99

7 12 3.2e-06 0.00065 21.4 0.6 1 20 369 388 369 391 0.96

8 12 4.1e-05 0.0083 17.9 1.2 1 23 397 420 397 420 0.95

9 12 0.0034 0.7 11.9 1.0 1 23 429 452 429 452 0.97

10 12 9.9e-08 2e-05 26.2 0.5 1 23 573 595 573 595 0.99

11 12 0.00022 0.046 15.6 0.8 1 23 601 623 601 623 0.99

12 12 0.01 2.1 10.4 2.6 1 21 629 649 629 650 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.5e-05	0.0031	19.3	0.6	2	23	182	203	181	203	0.96
2	12	0.00026	0.052	15.4	0.4	1	23	209	231	209	231	0.98
3	12	1.2e-05	0.0024	19.7	0.3	2	23	237	258	237	258	0.97
4	12	0.017	3.6	9.7	0.1	3	23	266	286	264	286	0.95
5	12	5.8e-05	0.012	17.5	0.6	2	23	299	320	299	320	0.98
6	12	1.3e-06	0.00026	22.7	1.4	1	23	341	363	341	363	0.99
7	12	3.2e-06	0.00065	21.4	0.6	1	20	369	388	369	391	0.96
8	12	4.1e-05	0.0083	17.9	1.2	1	23	397	420	397	420	0.95
9	12	0.0034	0.7	11.9	1.0	1	23	429	452	429	452	0.97
10	12	9.9e-08	2e-05	26.2	0.5	1	23	573	595	573	595	0.99
11	12	0.00022	0.046	15.6	0.8	1	23	601	623	601	623	0.99
12	12	0.01	2.1	10.4	2.6	1	21	629	649	629	650	0.96

Sequence Information

Coding Sequence: ATGTCTGCCAACATGTTGACAGAGTCAAAGATAATTATGGACCCTACCTCCGAGTCCAGCGACACACTGCCAGTTAGTTTTATTACCACAGACGACGGTCACATGCTCTTTGCAGTGAGCGAACGTGAGGATGATACACTAGAAATCATGACAACTCCCATCACAGTGATACCACAAAGAAACATAGTGTCTTCGCTGATAAAGACTGTGGATGGAAATTTTATTCTACAATCTCCTATTTTTCAACTGAACGTGGAGGGTGTACCTGATACGCAACAAACGAATCTTTTGCCAGCGATTCAACACATTGAAAATGTATCTCCAGCTGAACAATTGAAACTAGTGCAGAATGTAAACGAACACGGTGATCTGTCGTTGTTGTGTAGCAGAGATGTTGTTAACGATGTATTGTTGGATAAAGAAGAACAGACAAAACACGATAATCACGTCAAAGATGATTCTGTACGCGCGGATACATCAAGACAGGATGTTCACAGGAGATCTCCTGGCAGACCGAAAAAGATCGGGGACGTGCCAACTCTGAGGTGCGATATATGCGGACAAGAATTTACCAGACAGTTATTGTATCGCAGACATATGGAGAATCACGCGGCGGAAAAACCGCACAGGTGTCCAAAGTGTCCGGCGTCGTTCAACATCCCGTTGAATTTCACGCTTCACATGGCAACGCATAATACCGGCGAGCCGAAGTGTCCCGAGTGCGGCAGGAAATACGCCAGAATGGCGAGTCTCAAGTCCCACATGTTGTTGCACGAAAAGGAGGAGAATCTCTTCTGCGCCGAGTGCGAGGACGGTTTTTCGACTAAGGCCCAATTGGACGCGCATTTAAAACTGCACGAGGAAAAGGCGGCGAACGAGGAAGGAGGCGTGCGAAAGTGTAAATTATGCAACAAACAATTCGTGCAACCGGCGCTGTACCGATTACATATTCGGGAGCATTACAGGTTACAGACAAAGATAGCGAAGCAAACGAAGAAAGGGATGAAACACAAGACGGTGTACAAGTGCACGATATGCTTGAAATTCTTTCAAAAACCGAGCCAGCTGATGCGGCACATCAGGGTGCATACCGGAGAAAAACCCTTCAAGTGTGTGATCTGCAACAGGGCGTTCACGCAAAAGAGTTCGCTGCAAATCCATATGTGGCAGCACAACGGCATTCGACCGCACAGTTGCAATCTCTGCACCGCAAAATTTAGTCAAAAAGGAAATCTAAAGGCACACGTACTTAGGGTGCACAGTGCTCCGGAGGGCGAGCCCTCGTACGCTTGTTCTTATTGCGCTTGCATTTTCAAGAAACTGGGCAGTTTAAACGGACACATAAAACGAGTGCATTCTAACGTCTCGGAAGAATCCGGGGCTAAGAAATCCACGGAAACCAACATCACATCGGAAGCCGACATGCGCGCAACGGTCGACAGCGTGATATCGCAACTGGCATCGTTGGAATCCACCGTGAACAATACCGTGGATTCTACCAAGACCGCCGCTGCGTCAAACGCGGAACAAAACGACATTTTGCACCAAGCGTTGAAAAACAGCGATCTGTCGAGTGAAGCCAAGGTTACGTCCAAAGAAACTGCGGAATCGAAAAAGACGGAGTCGACGACATACGTCACGATATTGGATAAAACTGCAAACGGTACTTCAAGGAACTTTACCATAAAGCAACATTACATAGGAAACGTGCGTTGGTACACGTGTTTGTACTGCCCGAAGGAGTTTAAAAAACCGTCCGATTTAATACGTCATCTGCGTGTCCACACACAGGAGAAACCTTTCAAGTGTATGTACTGCGTGCGATCATTCGCGCTGAAATCGACGATGATAGCGCACGAGCGAACTCACAGCGGATTGAAGAAGTACGCTTGCAATTCCTGCAACAAAAGCTTCGCCTGCCATAATACTCTTACCGCTCATATGAGGCAAGTTTCAACGTTATTTAATTTTGATTAA
Protein Sequence: MSANMLTESKIIMDPTSESSDTLPVSFITTDDGHMLFAVSEREDDTLEIMTTPITVIPQRNIVSSLIKTVDGNFILQSPIFQLNVEGVPDTQQTNLLPAIQHIENVSPAEQLKLVQNVNEHGDLSLLCSRDVVNDVLLDKEEQTKHDNHVKDDSVRADTSRQDVHRRSPGRPKKIGDVPTLRCDICGQEFTRQLLYRRHMENHAAEKPHRCPKCPASFNIPLNFTLHMATHNTGEPKCPECGRKYARMASLKSHMLLHEKEENLFCAECEDGFSTKAQLDAHLKLHEEKAANEEGGVRKCKLCNKQFVQPALYRLHIREHYRLQTKIAKQTKKGMKHKTVYKCTICLKFFQKPSQLMRHIRVHTGEKPFKCVICNRAFTQKSSLQIHMWQHNGIRPHSCNLCTAKFSQKGNLKAHVLRVHSAPEGEPSYACSYCACIFKKLGSLNGHIKRVHSNVSEESGAKKSTETNITSEADMRATVDSVISQLASLESTVNNTVDSTKTAAASNAEQNDILHQALKNSDLSSEAKVTSKETAESKKTESTTYVTILDKTANGTSRNFTIKQHYIGNVRWYTCLYCPKEFKKPSDLIRHLRVHTQEKPFKCMYCVRSFALKSTMIAHERTHSGLKKYACNSCNKSFACHNTLTAHMRQVSTLFNFD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01271417;
90% Identity: iTF_01271417;
80% Identity: -