Pden014819.1
Basic Information
- Insect
- Pseudomyrmex dendroicus
- Gene Symbol
- -
- Assembly
- GCA_014825645.1
- Location
- QVNZ01021713.1:12653-16765[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.15 18 6.6 0.0 2 23 25 47 25 47 0.94 2 20 0.41 47 5.2 0.0 1 23 53 76 53 76 0.95 3 20 8.7e-06 0.001 19.9 1.2 1 23 84 106 84 106 0.98 4 20 0.045 5.3 8.2 0.9 3 23 158 180 156 180 0.92 5 20 0.0013 0.16 13.0 1.1 1 23 183 206 183 206 0.97 6 20 0.00011 0.013 16.4 0.3 2 23 213 235 212 235 0.96 7 20 0.00061 0.072 14.1 3.9 1 21 263 283 263 284 0.95 8 20 0.0018 0.21 12.6 1.8 2 23 298 319 297 320 0.93 9 20 0.24 28 5.9 1.1 1 23 323 346 323 346 0.94 10 20 0.0082 0.96 10.6 1.1 2 23 353 376 352 376 0.90 11 20 2 2.4e+02 3.0 0.2 2 23 384 406 384 406 0.94 12 20 0.43 50 5.1 0.0 2 23 413 435 412 435 0.93 13 20 0.15 18 6.6 2.7 2 23 444 466 444 466 0.96 14 20 0.33 38 5.5 0.1 2 23 472 494 471 494 0.92 15 20 0.0084 0.98 10.5 0.1 1 23 556 579 556 579 0.95 16 20 0.0034 0.4 11.8 1.5 1 21 604 624 604 625 0.94 17 20 0.21 25 6.1 1.9 2 23 725 747 724 747 0.94 18 20 0.43 51 5.1 0.5 2 23 754 776 753 776 0.94 19 20 0.46 54 5.0 2.5 1 23 787 809 787 809 0.97 20 20 0.042 5 8.3 0.1 1 19 813 831 813 833 0.95
Sequence Information
- Coding Sequence
- ATGCTATTTGCCACGAAATCGTTGCGCAACGACCATATCCAGCATCACGTGATTCAGGGTCCGATACCGAATACGTGCGAGGTGTGCGGTAAGCTCTGGCCTACCCGCGTCGATTATTGGAAACATATGATGGGCGTGCACACGGCCACGGTGCCTTTTATCTGCGGCGTTTGTCTGAAAGTAGTTGCCAATGTGTTGAAGTTGCAGGCGCACGTAAGGGCGAAACATTGGCCGTTGACCAATGGTGATTTTAGCTGTGATATTTGCGGTAGACCGTATTCCAATAAATCGAAGATGTCGCGGCACAGAAAGATTCACGGCCTAGAAGCGGCATTGGCTGCGGCAGCTGCGACCGCAACAGGGGAAGGGGACGTCGTGTGCGACAACAGCAGTTTCAATGAGGCGACCAACGAATCAATAATGATCAAGCTCGAGCAAAACAACGGCGCCGCTGCGGAGGTCGAATTGAATTGCGAACAATGTCCCGATCTGAGCTTCTCGTCCTTGGACAGTTTGTGCAACCACCGGCGGTTAGTACACGGTCTTTTCCCGTGCGATCTGTGTGTCAAGTTCTACGGCAGAACATCACATTTGTGGAAGCACGTGAACAGAGTGCACAAGGGCCACGCGGACGTAACTTGTCCGTATTGTTCGAAAACCAGCGCGTCGAGGGATCATCTGGCCGCGCATATCGCGAAGAATCATAGATACGTGCCCGCGATCGGCAAGGACAGTCAGAACTGCGTCGCTTCCAAATCTCTCCAGAACGTGGAGGACGGCGTCCAGCATTACTGCGAGAAGTGCAACAAGGGATTCCACAAACGTTATCTTTTGCGACGTCACATGAAGGGTTGTCAGAACTATCGCAAGGATCCGGGCGCGTTGCTGACTCGTTGCAGAGCCTGCGAGAGAATATTCAAAGATCGCGCGAGTTTGCAGAAGCACATCGAGAATCATCACACCACGTACACGTGTCACTTGTGCAACGAAACTATCACATCCAAACTGGGCATTATGACGCACAACCGTGTCAATCACATGGACCATCCGGATCTCACGTGCAGCCAACCGAGCTGCAAGAAACTCTTCCGTACGAAGGAGGATCTGGAGTCCCATAGGAAAGACCATAAATATCACAGCAATCCGAACGTGTGCGATTTTTGTGGCGACACCGTTGAGAACAAGCTGAAGTTGAAAATGCACGTGCTTTCGTTACATCGAAATGAGATCGGTGTATCTTGCGGTGTCTGTCTCATTCCCATGAAGGATCCAAAAGATTTGAAGAAACACGTTGAAACGGAGCACAGCAGTGTTCTCACCAAACCAAATACGTGTCAAGTATGCGGCAAGCAGTACGCGTCTAAGTGGAAGGCTTTTGATCACACCAAGAAGTGTCACGGAAAAGTTTTCCTCACGTGCAAGCAATGTCTGGCAGTTTTCACGGATGAGAATGATATACGCGATCACTACGAATACGTGCACAACGTTCCGAAGGATCAGTTGTCCATTTTCGAGTACAAAATGGACGTCGGTGCGAAGAGAGAGGGTCACGAAACACCCGACATCGTCGTGAAAGAGGAACCGGACGATCTGGAGTTCGACGAGGAGATATGCGACGAGAGCTCGAACGACTCGCGCAAACGGAAGCGAAACCCGAACGATACTTACGACTGCGAGATGTGTCCGGAGATATTCCTGAACCAGGACACTCTCGCCAAGCATTACCAGAATGTTCACAACACCGATCCCGTTCGCATGTTTAAGAAGTTCAAGGACATCGGCGACAAACGCAAGAGAAATAGGAACAACTTCGAATGCAAGAATTGCAAGAGGCAGTTTCCGACGAAGACTCTGTTCTGGAATCACACAAGCACGTGCGTGCCGCGAAATTCAATGCGCAGATACGATTTCGCGAACAACATATCGACGTCGATTTTGGAGTCTCATTTGAAGAACAACAATCAGATTCAGCGGGAGGAGCTGATGCCGCTGACCAACGAGTCCAATCTGAATATTCCCGACTTCAATTTGTTCGAGGACATCAATATGCAACTGTCGGCACAGAAACCCGTGCCGAATCTCATGCCGTTATCGCACATGAAATCGGGGAACGGAAAATGTTCGAGGAAAGATTCGCGCAAGGTGTACGACGAATCGACCAATACAACGTGCACGTGCGAAGTATGCGGCAAACAGTGGCCCGCTAAGAAGCACTTGTGGCAACACTTGATACGTTTTCATCGCGCCGAAGCCGCGGTTACGTGCGGCGTATGTCTGAAGCTTTGTAAGTCGTACGAAGATCTGTCTGATCATCTCAAGGCCGAGCACGCCCCAGTTTTGTCACCGGAGGGTAACAACTTTACCTGCAAAACGTGCGGCAGATATCACAACGCGAGGAGCAAATTGCTGTTGCACATGAGCATTCATATCGGGAACTTCCGATGTCAAAAGTGTCAGCAGGGCTTTGCGAGTGAGGAGAAGCTCAGCGAACACGCAGCGCTCGGCTGCAGCAACAGGTCGGAGTGCGAAGATCAAGCAATGACCGCGGATGAGGACAACACGAAGAACGACAATGACGAGAAGGGTAGTTTGATTGCCGACGAGACATCGGCCATCGAAGAAGCGGAGGAAGAAGCCGAGGACTTCGAATCGGAGGGCGTTGAAAGCAGGGACATAAACGACGAAGAGGACAGCAACAGCGAGGAAGACAACTCGGAAAATAGCGACTCGGATAGCGCTAGTAGCAGTTCGAGCGATGACGAGGACGAAGAGAAAGACGAACAGGAAGAGGAGGAGGCAGAGGAAGCGGAGGAGGCGGAAGAGGGAGAGGAAGACGATGAAGATAATGAGAACGAGTCCGGGACGAGAACCACAAGCAGAGCGAGCGACAACAGTGTATCGTGTTCTTCCGAGAGCGAAGATTCCGACATGGATGAAGCAGAAGTGCGTACCGTGCAAAAGGAAGCGCCCCAGGTGAGCAACATGTTCGAGATACGTGACGACGGTATTGAAGAGAATTTAACAAATGTTGAAGATCAGAAAACCGATCTCGCGTCTGCTGGCCGAACAGACGCGGAACAGACGAGACCAAGTGACGCGAATGATCTATTAGTTTCTAACAAATCTATGAACATAGATAAATTTGAGACGTTGCATCTTGATAAGTCGCCTGCTAAAGCTGCGACGAGCGACGTAGAATTGTCTGACGATGATGACAAGGAAGACAACGAGAATGACAAGGAAGAAGAGAACAACGAAAACGACGAAGAAAACGAAGAAGAAGAAGAAGAAGGTGAAGATGAGGCCGAGAGCGAGGATGAGACCGAAGCGGAAGAAGAGGAAGACGAGGAGGAAGAGGAGGAGGAAGATGACGACGGGCCGCCGGTGCTGAGTCCGATAATGCCTTTGTTGCAGGAAAACGAAGCCGAAGAGCATAGCAACATAGATCGACACAAGCTTAGTCCGATGGTCTCTCTTAACATGCACAAAGATTTGGAAGAATGCGAGATAACGGAAGTACAAAACAGCGCGGAGAACGCGGATCCGTCGTCGAACGCGGCCACCTTCTACGCGGCGAACAACAACGATCTGTCCGTAACGTGGCACTCGGACTCGGACGACAACGGCGAACGCGATTGCGACTCGGACATCGGAGACAAGGATGTGATAGTGGTGAACAATCAGTTCGACAAAACGTACGAGAAGATGGAGATTGACGAGGACGAGAACTTCGAGGAGGATTCCATGGATGAGAACACGATGGACGACGACAGGGACGACGGAGCTGACGAGCAACAGGTGCACGAGATACACAATCTCGACGGGACCGTGTTAATGGTGGCGAATGACGCGGAGGGTAATCAGATATTGATAGAACAGAACATGTTGGATATCGAGAACGAGGATTCCAACGCCGAAATGACGCAGTACATTTACCCGGAGAACACTTACGAGATCGTGGAGGAGGATTACGGGACGCGCAACGAAGCCGAGGACATGCAAACGGACGAGATGGGCGGTGATGTGACTTACGTTCAGAACACATCGGAGAACGAGGAGGACAGCATGGAGGCCGGAGATATTGAGGAGAACAGTGACGACATACAAAAATAG
- Protein Sequence
- MLFATKSLRNDHIQHHVIQGPIPNTCEVCGKLWPTRVDYWKHMMGVHTATVPFICGVCLKVVANVLKLQAHVRAKHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGLEAALAAAAATATGEGDVVCDNSSFNEATNESIMIKLEQNNGAAAEVELNCEQCPDLSFSSLDSLCNHRRLVHGLFPCDLCVKFYGRTSHLWKHVNRVHKGHADVTCPYCSKTSASRDHLAAHIAKNHRYVPAIGKDSQNCVASKSLQNVEDGVQHYCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHTTYTCHLCNETITSKLGIMTHNRVNHMDHPDLTCSQPSCKKLFRTKEDLESHRKDHKYHSNPNVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKDLKKHVETEHSSVLTKPNTCQVCGKQYASKWKAFDHTKKCHGKVFLTCKQCLAVFTDENDIRDHYEYVHNVPKDQLSIFEYKMDVGAKREGHETPDIVVKEEPDDLEFDEEICDESSNDSRKRKRNPNDTYDCEMCPEIFLNQDTLAKHYQNVHNTDPVRMFKKFKDIGDKRKRNRNNFECKNCKRQFPTKTLFWNHTSTCVPRNSMRRYDFANNISTSILESHLKNNNQIQREELMPLTNESNLNIPDFNLFEDINMQLSAQKPVPNLMPLSHMKSGNGKCSRKDSRKVYDESTNTTCTCEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCKSYEDLSDHLKAEHAPVLSPEGNNFTCKTCGRYHNARSKLLLHMSIHIGNFRCQKCQQGFASEEKLSEHAALGCSNRSECEDQAMTADEDNTKNDNDEKGSLIADETSAIEEAEEEAEDFESEGVESRDINDEEDSNSEEDNSENSDSDSASSSSSDDEDEEKDEQEEEEAEEAEEAEEGEEDDEDNENESGTRTTSRASDNSVSCSSESEDSDMDEAEVRTVQKEAPQVSNMFEIRDDGIEENLTNVEDQKTDLASAGRTDAEQTRPSDANDLLVSNKSMNIDKFETLHLDKSPAKAATSDVELSDDDDKEDNENDKEEENNENDEENEEEEEEGEDEAESEDETEAEEEEDEEEEEEEDDDGPPVLSPIMPLLQENEAEEHSNIDRHKLSPMVSLNMHKDLEECEITEVQNSAENADPSSNAATFYAANNNDLSVTWHSDSDDNGERDCDSDIGDKDVIVVNNQFDKTYEKMEIDEDENFEEDSMDENTMDDDRDDGADEQQVHEIHNLDGTVLMVANDAEGNQILIEQNMLDIENEDSNAEMTQYIYPENTYEIVEEDYGTRNEAEDMQTDEMGGDVTYVQNTSENEEDSMEAGDIEENSDDIQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -