Pden024623.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pseudomyrmex dendroicus
Gene Symbol
-
Assembly
GCA_014825645.1
Location
QVNZ01021956.1:16640-22026[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0017 0.2 12.7 7.5 2 23 145 167 145 168 0.95
2 16 0.00054 0.064 14.3 1.4 1 23 172 194 172 194 0.99
3 16 0.0013 0.16 13.0 1.4 1 23 200 223 200 223 0.96
4 16 3.5e-05 0.0041 18.0 0.5 1 23 230 253 230 253 0.97
5 16 0.44 52 5.1 0.6 1 23 258 277 258 277 0.73
6 16 0.00056 0.066 14.2 2.0 1 23 288 310 288 310 0.96
7 16 3.2e-05 0.0037 18.1 2.0 1 23 314 337 314 337 0.96
8 16 4.4e-05 0.0052 17.7 4.7 1 23 371 393 371 393 0.98
9 16 0.00025 0.03 15.3 0.4 2 23 551 573 551 573 0.94
10 16 0.00014 0.016 16.1 1.4 1 23 577 600 577 600 0.97
11 16 0.001 0.12 13.4 1.0 2 23 607 629 606 629 0.92
12 16 7.3e-06 0.00086 20.2 2.7 1 23 636 659 636 659 0.98
13 16 0.37 44 5.3 5.8 1 23 694 716 694 716 0.97
14 16 3.5e-05 0.0041 18.0 1.7 1 23 720 743 720 743 0.96
15 16 0.037 4.4 8.5 5.1 5 23 753 771 750 771 0.92
16 16 8.3e-07 9.7e-05 23.1 1.4 1 23 777 799 777 799 0.98

Sequence Information

Coding Sequence
ATGATGCTGACACGATGGACTACGGTGTGGGACGCAACGAATGAAACGTATCGGCAGGTGCTGGTGCTGGTTAATTTGCAAGACGGCACATTGGCGAAGGGTGTCTTCGAAAAGATACCCTGTTCAACGAAAAAAAAAGTTGAAAACGAAAAACAGCAGCAAGAGGGAGCGAAGAAAAAGTCTGACGCGAAGAAAGAAGTAGACCAAGACTCGTCAAATAAAGAAGAAGAGAAATCTACAACGGAGGAAGAGAAATCTACAACAGAGGAAGAAAAATCTACAACAGAGAAAGAGAAATCTGCACAAACGTCTGAAATAACTTCAAAAAGTCAAGAAAAAGAGGAGGAGGAGAAGGAGGAGGAGGAAGAGAAAGAGGAAGAGATGGAGATAGAAGAAGACGGTATATTCAAGGATCAAGCGGACGATATACGCACGTGTCTGTTCTGCAAGAAGACTTTTGCTACTAATAACAGTCTGAAGAAACATCTCAGACAGTGTCATCACAGAAGAGCGTACAAGTGTGACAAGTGCACCACGTCGTGCTTTACGGAAGCAGCTTTGGCGAAACATCTCATGATACACGCGGAGGATTACTTTTTCGAATGCAATATGTGTCAGCTGAAGTACAAGCGCAAGTTATCGCTGGAGAATCACAAGATACGGGTGCACAGTAACGAGGCTCCTCGTTACATCTGCGATATTTGCGGTCAGTTCTTCAAAGTGAAACTGGACCTCTTTGCGCACATCAAAAGAAAGCACGACAAACGCTTGTACATATGTCGATACTGCGGACAGAGCACGACGGATCTCGCCAGCCACGAACGAAAGCACAAGAAAGAAAGAGGAGATCAGAACTTGGATTTCGCGTGCTCTTTGTGTTCCAGAAGGTTCAAGCATCAGATTTATCTTGACAATCACATGTTGTGGCATAAGCAGGGTTACAAGTGCACCACGTGCGACTTGGTCTTCAAATCGTGGAATCAACTCAAGTATCACAAGAGCCGCGAACACGAAGACCCGACCAAACCCTGTCCAGTATGCAAAAAGAATATCATGAGCACAGGTAACACGTTTTATCAGCATATTCTCACGCACGCCGGTATCAGACCGTACGAGTGCGACGTCTGCCACGAGCACTTCACTCAGCGAACTAGTCTTCTACGGCATCGCAAGATTCATCCCGGTCCTCTTAAACCCTACACGCCTCAGATTCCCATCGCCAACTTAGCTAGAAATTATTTGAAAACGGTGGAAGAAAAGCTTATCATCAAGAGGACAGGAGAACAAAGTGAAAAAGAAACTTCTGTCTGTGTTGTCTCCATTGTATTGGCGCCATTGGAATTTAAATTTGCACTGAATCAGATTGAATGCAATTCAACGACAAGTGGAAATGACGGTTTTGTTCAGTGTCAAAATATAGAATTGATTGAAGAATCGGTTAAAGAAGAACCGGTAGATTCGGAATCCATACATCCACATCATTTGCAGTCTGTAAGCGTGGAATCAATTAAAATAGAGCCGCAGGATTCACAATTCACAACAAACCACGATGTCACGATAGAACCGAACGTGGGGGAAGACGTGCCGCAAGACTCTCTGAACACACACAAAGAACCAACTGAAGATGAAGTTATGAAACAGATAAAAAACACGTGTCCGTTTTGCGACAAAAAGTTTACCGATGCGTATAAGGTTGAGCAACATGTCATGTACTCGCATCGTAAATCTTATCCCTGTAACATATGTAGGAGGTCATTTTGTGCGCCAAAATTGTTAGAAGAACATCAACAGAGGACACACGGACCGGAATTTTTCTTGGAATGCAAAATCTGCCACATCAAGTACAAGAGCGAGGACGGACTGAAGAGACACAACATTCGCATTCATACCAATGTAGAGTCAAAATTCACCTGCGAGCACTGCGGCCGCAGTTACAAGCTAAAGGCCGACCTGTTGACTCACATGAAGAGAACTCACATGTCGCAGTTGCAGATATGTCGCTTCTGCGGCAAAGCGGTCAAGGATGTGAAGAGTCACGAGTGGCGGCATCAGGAGCGAAACGGCGAGTTCAAGTACGCGTACTCGTGCCACCTGTGCCGCAAAAAGTTTCTCCACAGAAGCAGACTGGACAATCATCTGTTATTGCACAAGAAAGGCTTCAAGTGCGAGAAATGCGGCAAAGAGTACGTCGGCTCGCGCGAGCTCAAGAGCCATCAGCGTTTCAAACACGGTCAGACGATCATTTCCACCTGTATTCTGTGTCACAAAAAGTTCACGTCGATCAGCAATTTCCATCAGCACGTGCTCACGCACGCCGGTATACGACCGTACAAGTGCGACATCTGCGACGAGGACTTCACGCAGCGTTCCAGTCTGCTGAGACACAGGAAAAATCATCCCGGACCGTTGCCACCGTGCACGGCGCCGCATCCGCAGATAGCCGACCTCGCGAGATGTTACCTCCAAAAAGTTAAAGACGATCCCGATTCAGTATTGAAACACGCGCGATTCTGA
Protein Sequence
MMLTRWTTVWDATNETYRQVLVLVNLQDGTLAKGVFEKIPCSTKKKVENEKQQQEGAKKKSDAKKEVDQDSSNKEEEKSTTEEEKSTTEEEKSTTEKEKSAQTSEITSKSQEKEEEEKEEEEEKEEEMEIEEDGIFKDQADDIRTCLFCKKTFATNNSLKKHLRQCHHRRAYKCDKCTTSCFTEAALAKHLMIHAEDYFFECNMCQLKYKRKLSLENHKIRVHSNEAPRYICDICGQFFKVKLDLFAHIKRKHDKRLYICRYCGQSTTDLASHERKHKKERGDQNLDFACSLCSRRFKHQIYLDNHMLWHKQGYKCTTCDLVFKSWNQLKYHKSREHEDPTKPCPVCKKNIMSTGNTFYQHILTHAGIRPYECDVCHEHFTQRTSLLRHRKIHPGPLKPYTPQIPIANLARNYLKTVEEKLIIKRTGEQSEKETSVCVVSIVLAPLEFKFALNQIECNSTTSGNDGFVQCQNIELIEESVKEEPVDSESIHPHHLQSVSVESIKIEPQDSQFTTNHDVTIEPNVGEDVPQDSLNTHKEPTEDEVMKQIKNTCPFCDKKFTDAYKVEQHVMYSHRKSYPCNICRRSFCAPKLLEEHQQRTHGPEFFLECKICHIKYKSEDGLKRHNIRIHTNVESKFTCEHCGRSYKLKADLLTHMKRTHMSQLQICRFCGKAVKDVKSHEWRHQERNGEFKYAYSCHLCRKKFLHRSRLDNHLLLHKKGFKCEKCGKEYVGSRELKSHQRFKHGQTIISTCILCHKKFTSISNFHQHVLTHAGIRPYKCDICDEDFTQRSSLLRHRKNHPGPLPPCTAPHPQIADLARCYLQKVKDDPDSVLKHARF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-