Pden013118.1
Basic Information
- Insect
- Pseudomyrmex dendroicus
- Gene Symbol
- -
- Assembly
- GCA_014825645.1
- Location
- QVNZ01019300.1:1-3361[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.5e-16 5.8e-13 48.9 0.0 2 42 272 313 271 316 0.94 2 2 4.1 4.3e+03 -1.9 0.0 25 32 399 406 398 407 0.86
Sequence Information
- Coding Sequence
- ACTGCGGAGAGTTTAAAAATAAAGGGGCTTGCAGAAATGCACACAGCGTCATTGACCAAGTGGCCAAGCGGCAGCAGCGAAACCGGCGGAGGAGATCGTGGTGAATCTTGTTCACCCAGTCCGTCTCCATTGTCTCCCTCGTTTCGTAGAAAAAGATTAAGGAAATCTTCTACAGGTTCGACCTCTGGCTCAGGCGACAAACCGGAAGAGATTAACGAAATCACGTTAGTGGCAACTAACATTGTAAAACCCGAGCCTCTAATTGCCTCGCAAGAAAGTGGAGAAAATTTGAGGCGACCGGTGAATACCAGCACAGAATCTCAGGGCAGCATTGACGAGGATCAAATATCGATTATGAGTAATATGGAGACCAGTTCAGCCAACACGCCAGCTCAAAGCGACGGTTCTATTCAGGATGTAAGTCAACCGACCGGGGGAAATATAGGACAAGCAAGTTCCGTTTCTTCGCAACCACCAGTTCATCAAGGATTACAATGGACTATTATGGAGCACACATATCATCCACGTTTCGCTCTGTCCTCGTGTCAAACGAATCTGTCGATCCAAGCGTCGTCGGCGTTTACGACGCCCGAAATAACAGCATCCTCGACCATCAGCGATCAGTACTCTGGTACCAGCACGACTGGTTCCAGTTGCGCCTTGACGAACTATCCGAACTCCTCCCACGGGACGTTGCAACACTCGTCGTCGGGCGGACCCTCGCCATCGGCGCAGTGCCCGAGTAACTGCCAGAGTCCTTGCGCCAGCCCGCAGACTGCGATTAAGAGGAAGCGCTCGACTAATCCACAGGCGGACGAGAACTTTATACGCGCGCTCGACGCCGTACGCTATGGCGGCATAGGGTTTTGCAAAGCGGCCAGGATGTTCGGCGTGAACAACCGAACGCTCTGGCTCGAGTATAAGAAGCGCGGCTACCCGAACAATCGGCCCAGTCTTAAGTCCCGCGTTAAGCAAGAAGTCAACTCCTCGCCGCCCCCGGCGCCACCGGCGGCGCAGCCCATGAACTCGCAGAGCCCGACACCGATGGGCCCGCCAACGACTCCGCACAGCACACACAATACCCACACCACCCACACCATGCTGACCAGTCACAGTCCTCACACGATGCTGAGCGGTTACATTGACAGCAGGCACACGGATTACTCATTGCCGAGTAGCACGATGCCGATCAATCTGCACGGCGTTAATTACAACACCATGTGA
- Protein Sequence
- TAESLKIKGLAEMHTASLTKWPSGSSETGGGDRGESCSPSPSPLSPSFRRKRLRKSSTGSTSGSGDKPEEINEITLVATNIVKPEPLIASQESGENLRRPVNTSTESQGSIDEDQISIMSNMETSSANTPAQSDGSIQDVSQPTGGNIGQASSVSSQPPVHQGLQWTIMEHTYHPRFALSSCQTNLSIQASSAFTTPEITASSTISDQYSGTSTTGSSCALTNYPNSSHGTLQHSSSGGPSPSAQCPSNCQSPCASPQTAIKRKRSTNPQADENFIRALDAVRYGGIGFCKAARMFGVNNRTLWLEYKKRGYPNNRPSLKSRVKQEVNSSPPPAPPAAQPMNSQSPTPMGPPTTPHSTHNTHTTHTMLTSHSPHTMLSGYIDSRHTDYSLPSSTMPINLHGVNYNTM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00129647;
- 90% Identity
- iTF_00129647;
- 80% Identity
- -