Pden008252.1
Basic Information
- Insect
- Pseudomyrmex dendroicus
- Gene Symbol
- lola
- Assembly
- GCA_014825645.1
- Location
- QVNZ01014393.1:334-2683[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2e-06 0.0021 18.2 0.0 5 37 188 220 187 226 0.83 2 4 3.8e-10 3.9e-07 30.2 0.0 2 40 235 272 234 278 0.89 3 4 0.22 2.3e+02 2.1 0.0 21 34 305 318 291 324 0.80 4 4 2e-10 2.1e-07 31.1 0.1 4 38 349 383 346 389 0.90
Sequence Information
- Coding Sequence
- ATGAATGAGCTTACGTGCATGAGGCAGCACGAAGGCAATCACATTTACCGCTTTAAATGGAACGATTATCAAATTCATCTAGCTGATGTTGTGCGACAACTGTTGCAGGAAGATTGTATGGTGGACGTTACACTTTCCGCATCAGGCGAACGTATTCATGCACATCGCATCGTGTTGTGTGCATGTAGCACTTTGTTCCAAGAGATTCTTAGTCAAGTTACAGAAGATGATCCAACCATTATTCTTAGTGACATATCTTCTCAGGATATAAGGTCCATCATTGAATTCATATATCGTGGTGAGGTCCGAGTTCCTGTTGACAATATCAGCAGTTTACTTGAAGCTGCACAGTCATTAAAAATAAGTGGTCTTGTTGATATAAATGGACTTGAGGAAAATCAAAGGATCATAAACAGACAAGATTTTATAGAAGAAAATGTGACAGATGAAACTGAAGAAAATAAATCCAAGAACTTACAAAGTCAACAAACTATTGAGAATAAAAAAAAACGTCAACACAAGATCCGTGAAAACACAAAGAAAGACTATAATGATGTTATGTTACAATCTGCAATTGAAGATTTGAAAAAAGGAATGCCTTTAATAGATGCTGCCACCAAGCATAATATACCTCGCTCAACATTGTACATGCGAGCAAAAGCATTAGATATACATTTAAATGCATCAAGAAATGGATATCCTGAAGAATGTATGAACGCAGCAATGTCTGCTGTAATGAGTGGTTCAAGCTTGCAGCATGCATCGGAAGTGTATAGGATCCCTAAAACTGTATTATGGAGACGTATGCAAAAAAAAGGCTATCAAATCTTGCGTCCTGAAATGAAGAGATCGTACGCTTTAGACACAAGAGAGGCTGCTGTTAAAGCTTTAGAGAGAGGAGAGAATCTCACAAAAGTCGCACTAGAATTTAAAATACCGAAGACTACATTGTTTAGAGACAAAGCGCGATTAGTGAATCAAGGTAAATTACCGTTGTCGTTTTGGAAGAAACGTAAAACGGAGAATGAGGAATTAAAAAAATCACGTTTGGAAAAAGCTGTGGCTGCCTGCAAGGGTGGTAAAATGTCTCAAGCTGCGGCATCTATTACATATCAAATTCCGAAAACTACGATATGGCGAAAGCTTCAACAAGATGGGAAAAAAATGGAAAAATCAAACATAAAAAAAGAAAAAACGATCGAAAGACAACAACACGATAATGAGATGAAAACACAAGACGATTCTAACTTCAACTATTGTGAGGTTTCGTCAGAAATACCTGTAACTTATATAGATGAGAGTAGTATACCTGAGGACTCCGTAATAATCTTGACAACAGAGGATTTAAATGAATTAAATTTAGAAGAAGGAAGACAAATTATTGTAAATTCTGAATCTGGACAAGAATACGTACCATGCGCAATAAGTATTGAACAAAGTTCAAGTTATTCGGAAGACGCGGGTTAG
- Protein Sequence
- MNELTCMRQHEGNHIYRFKWNDYQIHLADVVRQLLQEDCMVDVTLSASGERIHAHRIVLCACSTLFQEILSQVTEDDPTIILSDISSQDIRSIIEFIYRGEVRVPVDNISSLLEAAQSLKISGLVDINGLEENQRIINRQDFIEENVTDETEENKSKNLQSQQTIENKKKRQHKIRENTKKDYNDVMLQSAIEDLKKGMPLIDAATKHNIPRSTLYMRAKALDIHLNASRNGYPEECMNAAMSAVMSGSSLQHASEVYRIPKTVLWRRMQKKGYQILRPEMKRSYALDTREAAVKALERGENLTKVALEFKIPKTTLFRDKARLVNQGKLPLSFWKKRKTENEELKKSRLEKAVAACKGGKMSQAAASITYQIPKTTIWRKLQQDGKKMEKSNIKKEKTIERQQHDNEMKTQDDSNFNYCEVSSEIPVTYIDESSIPEDSVIILTTEDLNELNLEEGRQIIVNSESGQEYVPCAISIEQSSSYSEDAG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01267677;
- 90% Identity
- iTF_01267677;
- 80% Identity
- iTF_01268391;