Pcub005869.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pseudomyrmex cubaensis
Gene Symbol
nfxl1
Assembly
GCA_014825685.1
Location
QVOA01008653.1:17675-20529[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 1.1 1.3e+04 -3.3 1.1 15 19 126 130 125 130 0.81
2 18 0.15 1.8e+03 -0.5 0.8 4 10 161 167 160 167 0.95
3 18 5.8e-08 0.00069 20.0 15.1 1 18 175 191 175 192 0.98
4 18 9.7e-08 0.0012 19.3 13.5 1 18 229 245 229 246 0.93
5 18 2 2.4e+04 -4.6 1.0 6 10 271 275 271 275 0.81
6 18 0.014 1.7e+02 2.7 10.1 1 19 281 300 281 300 0.90
7 18 5.8e-06 0.069 13.6 9.5 1 18 336 353 336 354 0.97
8 18 0.0086 1e+02 3.5 7.6 1 12 388 399 388 399 0.94
9 18 2 2.3e+04 -4.1 1.6 6 10 409 413 409 413 0.95
10 18 7.6e-07 0.0091 16.4 14.4 1 19 419 437 419 437 0.91
11 18 1.7 2.1e+04 -3.9 1.3 6 10 465 469 464 469 0.76
12 18 0.00011 1.3 9.5 9.8 9 19 484 494 482 494 0.90
13 18 0.00067 8 7.0 8.1 1 12 504 514 504 514 0.95
14 18 0.89 1.1e+04 -3.0 5.8 14 18 549 553 549 554 0.89
15 18 0.0041 49 4.5 8.7 1 12 590 601 580 601 0.80
16 18 2 2.4e+04 -4.7 1.6 6 10 618 622 617 622 0.85
17 18 7.8e-05 0.93 10.0 17.2 3 19 631 647 630 647 0.92
18 18 0.00036 4.3 7.8 14.7 1 18 692 711 692 712 0.85

Sequence Information

Coding Sequence
ATGCAGAAATTTAAAATAGCCCAGGCACAAAATAAGCTGTCTATTGAAAGACACTTGGAAGCTATTGCGTTATTGAATTCGTCTAGTGAGGACGAAGATGAGGCAAATGAGGAAGACGCGCAACATATAGTGGATAAAGTAATATCCGCGTATCAAGGGCAAAGAGCAGACGCAGAGAAAGTGATATCGCATTTAATTAATTCTCTTCAATCGAGCAGTGCTGTCTGCTTGATATGCATATCAACTGTCAAGAAGACAGATCCGATATGGAACTGCTGCAAGTGTTATGCATTTATGCACATGTCCTGCATCTTACATTGGATCAACGACAGTTTGAGATACAAACGGGATAAGGGAATTACTCCAATTTGGGCATGTCCAAAGTGTCGTACGGAATATGAGCAAAACCAGGTTCCGAGATCGTATGAATGTTTCTGTAAGAAGATCACAGATCCTCCGTATCAACCGTGGAGCATTCCGCATTCTTGCGGCGAAACGTGCGGCAAGCTCCTGCAACCGGAATGCGGTCACAAATGTGTGCTGCTCTGTCATCCCGGTCCGTGTCCGCCGTGTGCAAAGACGATCAGTATTAAATGCTACTGCGGCAAGCAGCCGGCACAGCTACGTCGATGCAACGCCAAAAATTGGAGCTGCAAAACTATATGCAACAAACAATATGAGCTCTGTTCGCACTCTTGCAATAGTTTGTGTCACTCCGGAGAATGTCCTCCCTGTGAAGAAATAATATTATTGAAATGCCGTTGCAAAAGTAATGAGAGAGAAGGGAGATGTTGCGAAGGTACGTGGATTTGCGACAAGCCCTGTAACAGAAAATTCTCCTGCAATGTACACGTTTGCAAGAGCACTTGTCATTCACCTGACGATTGTGACAATTGTCCTTTGGAGAAAAACCGAACTTGCCCATGTGGAAAGAAACGATACGAGGTTTCGTGCGAGCAGCAGCAAGTGCCGACATGCGGCGATACCTGCGGCAAGCTGTTGGACTGCGGATCGCACTACTGCAGCATGAGGTGTCACACTGATCGTTGCGGTCCGTGCTTAGAAGTGGTGACCAAGTCCTGTAAATGTGGCAGTTATACGAAGGAACTGGCCTGCGTGAAGGAATATCACTGCAACAAAAAGTGCACGCAGATGCGCCAGTGCGGTAAGCACTTGTGCAACAGGAAATGTTGCGACTGCATATTGAAGAATACGCTCAATCTCTGCGAGAAAACGTGCGACAATACGCTCAAATGTCGTAAGCACAAATGCGGCGCTCCCTGTCACAGTGGTCCGTGTTATCCGTGTACCAGAACGGATGTCATACAGTGTCGATGCGGGAGTAACAAAATAACGGTGCCGTGCGGCTCCAAGAGGAAGAAACCGCCGCCGTGTAACAAACCCTGTAAAATTCCACCCATCTGCCACCACAGCAAGCAGGAAACGCACAAATGTCATCAAGGTCCGTGTCCACCGTGCAAGAAGATTTGCGGCATCACGTACAAGAGGTGCGGTCATTCTTGCCAGGCCACTTGTCACACCAAGGTCTACGTGAAGGTCAAAACGCAATCGGTCGGTTATCCTTGGGATAACAAACAGGAAAGGATAACGTCGAGGGACGGTATAAAGCAACTGAAAACTTTACCGTGTCCACCGTGCGAGGTTTCCGTGCCCGTGACTTGTCTCGGAGGTCACGAGACGCGTTCCTGGCCTTGTCACTTGTCGAGACCAAGTTCTTGCGGCAGAACCTGCGGACAACTACTGTCGTGCAAGAATCACACCTGCGAAATGATCTGCCACAAGATACGAAACAGCGAGAGCGAATCTGACAGTGGTACTCCGTGCGTGGAATGCGAGAAGTCATGTCAGTTTGCGCGCCCGCAGGGTTGCACACACCCGTGTCTACAACCTTGTCATCCGGGATCGTGCAAACCGTGCAAGCAATTGGTGCGAATCTCATGCCATTGCGGTATCAGCACCCTTTACCGGCATTGCGTAGATCTGACGTCCTCGACAAATAAAAAACGAGACGAGTTGCTCAAATGTGGAAATCAATGTCCTAAAAGTTATTCTTGCGGTCATCGCTGCGTCAACGATTGTCACCCGGGACCATGTAAAGGCGGAGAAGAATGTAGCAAGAAGATCAGATTATGGTGCAAGTGTAAACGAATAAAAAAAGACTTTTTTTGCTCGTTACTCCAGAAAGAACAGATCGCTGTGGAATGTGACAATATATGCGAGTCGTTGATGAACGAGAGAAAAGAAGCTGAGGAAGCTAGGATAGCAAAGAAGCGAGAAGTAGAAGAGCTGCGCAATCGAAAAGAGATCGAGAAATTCGAGAAGAAGTTCAAGCCACGACGAAAGAAGAAAGATAAGTACGAGAAGTCGGAGCAGTTGCGAGAAAACGTGGGAACGAGAGCTTGGAGATTTTTCAAAGGCTTCTTTTTCAATTGGAACGTTTCATTAATCATTTTGTACTTTGTACTCGTAGTAGTCTGCGTAATATGTATAGTAGCATCGGTGGCAATATGGAATAATGCAAGTGAATCCAATTTGCAAATTGTAGACATACAATGA
Protein Sequence
MQKFKIAQAQNKLSIERHLEAIALLNSSSEDEDEANEEDAQHIVDKVISAYQGQRADAEKVISHLINSLQSSSAVCLICISTVKKTDPIWNCCKCYAFMHMSCILHWINDSLRYKRDKGITPIWACPKCRTEYEQNQVPRSYECFCKKITDPPYQPWSIPHSCGETCGKLLQPECGHKCVLLCHPGPCPPCAKTISIKCYCGKQPAQLRRCNAKNWSCKTICNKQYELCSHSCNSLCHSGECPPCEEIILLKCRCKSNEREGRCCEGTWICDKPCNRKFSCNVHVCKSTCHSPDDCDNCPLEKNRTCPCGKKRYEVSCEQQQVPTCGDTCGKLLDCGSHYCSMRCHTDRCGPCLEVVTKSCKCGSYTKELACVKEYHCNKKCTQMRQCGKHLCNRKCCDCILKNTLNLCEKTCDNTLKCRKHKCGAPCHSGPCYPCTRTDVIQCRCGSNKITVPCGSKRKKPPPCNKPCKIPPICHHSKQETHKCHQGPCPPCKKICGITYKRCGHSCQATCHTKVYVKVKTQSVGYPWDNKQERITSRDGIKQLKTLPCPPCEVSVPVTCLGGHETRSWPCHLSRPSSCGRTCGQLLSCKNHTCEMICHKIRNSESESDSGTPCVECEKSCQFARPQGCTHPCLQPCHPGSCKPCKQLVRISCHCGISTLYRHCVDLTSSTNKKRDELLKCGNQCPKSYSCGHRCVNDCHPGPCKGGEECSKKIRLWCKCKRIKKDFFCSLLQKEQIAVECDNICESLMNERKEAEEARIAKKREVEELRNRKEIEKFEKKFKPRRKKKDKYEKSEQLRENVGTRAWRFFKGFFFNWNVSLIILYFVLVVVCVICIVASVAIWNNASESNLQIVDIQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01268678;
90% Identity
iTF_01269484;
80% Identity
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