Basic Information

Insect: Pseudomyrmex cubaensis
Gene Symbol: -
Assembly: GCA_014825685.1
Location: QVOA01020335.1:4259-7699[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0024 0.26 12.2 1.0 1 23 114 137 114 137 0.90

2 12 0.0067 0.73 10.8 4.7 2 23 260 282 260 282 0.91

3 12 5.4 5.8e+02 1.7 7.6 3 23 428 449 427 449 0.95

4 12 1.2 1.3e+02 3.8 2.5 1 23 495 518 495 518 0.88

5 12 7e-05 0.0076 17.0 0.2 2 23 566 588 565 588 0.96

6 12 0.0012 0.13 13.2 0.2 3 23 613 634 612 634 0.94

7 12 0.007 0.76 10.7 3.6 2 23 687 709 686 709 0.96

8 12 0.095 10 7.2 4.2 3 23 724 745 722 745 0.92

9 12 3.4e-05 0.0037 18.0 0.5 2 23 796 818 796 818 0.96

10 12 0.38 42 5.3 0.2 1 23 898 920 898 920 0.97

11 12 0.00024 0.026 15.4 0.2 2 23 935 957 934 957 0.95

12 12 0.014 1.5 9.8 1.0 1 23 1028 1051 1028 1051 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0024	0.26	12.2	1.0	1	23	114	137	114	137	0.90
2	12	0.0067	0.73	10.8	4.7	2	23	260	282	260	282	0.91
3	12	5.4	5.8e+02	1.7	7.6	3	23	428	449	427	449	0.95
4	12	1.2	1.3e+02	3.8	2.5	1	23	495	518	495	518	0.88
5	12	7e-05	0.0076	17.0	0.2	2	23	566	588	565	588	0.96
6	12	0.0012	0.13	13.2	0.2	3	23	613	634	612	634	0.94
7	12	0.007	0.76	10.7	3.6	2	23	687	709	686	709	0.96
8	12	0.095	10	7.2	4.2	3	23	724	745	722	745	0.92
9	12	3.4e-05	0.0037	18.0	0.5	2	23	796	818	796	818	0.96
10	12	0.38	42	5.3	0.2	1	23	898	920	898	920	0.97
11	12	0.00024	0.026	15.4	0.2	2	23	935	957	934	957	0.95
12	12	0.014	1.5	9.8	1.0	1	23	1028	1051	1028	1051	0.98

Sequence Information

Coding Sequence: ATGTCATCGGGCGTGACGACGTCGCACGAGGCGTCGACGATGGCGGAGACGGCGGAGCTGGACAGCGACGGTTCGAGCTGCGGCGAGCGCGACGCCTGGAAGCGTGTTCGCGGCGATTCCGCCGATGCCGGACCGAAGAAACGCCGGAAGCAGACGACGCCGGTAAGATTCTCGTCTAGTCTGGTGACGGACACGGACGCGCGCGAGGACGAGCGCGAGGACGAGGGCAGCGAAGGTAAGCCGTCGTCGCGATCGCCGTTGCCGGGCAACGATCATCATCATCACCACCACGACCACCATCATGACCACCCATCGAAAGACGAGAATCTAAACAACGAGTTTCGTTGCCAGCATTGCGGCCGGCTCTTTGACAGTCACGAGACGCTCGCCGTTCACGTGGACGGCGAGCACGGCGACGCGACACCGGGCGTGGCCGTCAAGGTAGAGCCGGCACAGCAGCTGGATTACACCAACGAGAGCCCCATTAGTCTTCTCAGCGTTAAGAACTTCGCTACCACGTGGCTCGCGTCCGGCAGCCAGCAACAGCAACACGTGCAGTCGCAGACGCAGATGCAGCCGCAAAGCGAGGAAACATCGTGGTCGAGCGGTCCGGTAAATCAGATTGTCACGATGACCAATCACCTCCAAACGCTTTCCGGTTTTCCGAGCGCGCTCACGCAATATATGCCCCTACCTAGTTTTCCCTTGACAGATCCCCAGCATCTCCCAAGATCGTCTCTCGGCTCGGTGCCGGTCAAGATCTTCAATCCCGAGGCGTACTGTGACATGTGCAACAAGGAGTTTTGCAACAAATATTTTCTGAAAACGCACAAGGCCAACAAGCACGGAATCTTCGTGGACTCGCCGGCGCCGAGCAGCGCGCCCATCGACAACGCCGGCGCCAGCCACGTGTTCGCCACAAACTTCCACACCGGTACCGTAAACGTGAAACTAGAACCGCCGGCGACACCGCCCCAGAAGCGTTTCCGCAACGAGGAATCCGCGGTAAAAAAGCACAAGCAAAAAACAAACGAGTTGGATCAGCAGTCGGACAGCCAGCAGATCTTGTCGCAAAACGAGGAGGACCGTGAAACACCGCGCAATAGTCCCAACAGCATGGAGGTGCTTTTGAAGGTGCAGGAATACGGCGTCGAGCAAGAAGACGCGACCTTCATGCCGGCACCGAGACACCTTTCACCTCAGTCCATCCAGCAGGCGCGCGATTCCGGTTTTAGCGCCGATCTTCTGCGTCGTTTGGGCGTCATAAATCCCGAGGCGTTCTGCGAGATCTGCTGCAAAGAGTATTGCAACAAGTACTTTCTGCGCACGCACAAAATGAAGCGGCACGGCATCATCGTGCAGGACAACGAGAGACCGCCGAGTAATACTAGCGCCACCTGGCATCAGGTGCAAACCAGTCCTCTCAACTTGATCGTAACCGAGACCGCGGGTTCGGAATCCAACGATCGCGCCAGCGAGGAACACGAGTGCAAGTCGTGCGACATTCGTTTCCAAACAATCGGTTTGTATCAGGCGCATTGCAGAGAGATGCACGAGAGCGAGGAACAAGTCTCGCCGAAACAGGAGTACGACCTGGACTGTCCGGATCAGCGCACCGATTCGATATCCGAAGACCTTCAGAAGTTGCAAACGATGATCATGCAGCTGAACGGTTTGGACTCCAATAAGGGATTGTCCTGCGCCGTCTGCGGCAAGGAATGCGATTCGAGGTCGGCTTTGCGCGTGCACATGGCGACCGAGCACGGCGTAGCCAACGAGGAAACCTCACCACCACCGCCGCAGGAAAAATCCCCCGCGGTGATTTTAGCGAATTTCTGCACTCTGTGCGAAAAGGATTATCCGAGCCAGGAGGCTCTGAAGAGACACATCAGCGAGGAACATCAGCCCATTGTGACCAACGCTCTGCCGACACTTCCGCCAATCGTGATCGCTTCGACTTCCGCCGGTTCGACGCCAACCAGCCAGACCTCGAACAGCCACACAACAACGACGATGACGACGGAGAGAAAGGTAACGTCGTTGACACCCACGTCGAGCTACTGCGAGATTTGCAACAAGGAACTGTGCAACAAATATTTCATGAAGACCCACATGCAACGGATGCACGGCATCGAGATCGAGAATGGCGCCCAGATCGGCGGAGTGATCTGCAACATCTGCAACAAGGAACTGTGCAGCAAGTACTTTCTGCGCGTTCACAAGCACAACACCCACGGGATCGTCGACGAGAACACGACGTCCTCGGGAGCGGTGACGTCGAGCAAGCAGGAATCCTACGACGCTTCCAGCGGGGGGGAGGACTCGGCATTGAAACCGGAACAACTGGGCGACCTTAGTCACAGATACTTCACTCACTTCACCGAGGTCTGTCCGATCTGCAACCGCAGGTTTCGCACCGTCAAGTGGCTCAAGACGCATCTGATGAGCGATCACGGCAAGGCGGGCAGCGACAAGTGGCGAGAATTGGAGCAGCAATATCAACAGATCCCCAAAACCAGCGGCAGAAGTGTCGTCCCGGCGAAAAACATCCAGCCCCAAGCGCCGAGTCTGAAGATTCCCAACGGCTTCGAGATCACGCAGCAGATCAAGACCATTGATTACTCGAATCTGGGGAATCAAGTGCTGTCGAATCTTCTCGGTTCCTCGTCCGAGGAGCATCCGCTGAAGAACTATCGCTGCGCTTACTGCAACTTCGCCACTCCGGTGCTGCCGTTTCTCTTTCTTCACGAACGATCGCACGTGAATCCGCAGGAAAACGTTCTCGAAAGCGATCGGACGCTGCAGTGCCCGGTCTGCCCGCAGGACTTCAATCAACCGGAGCTTTTGCATCAACATCTTCTCGTCAAGCATCAGTTTCCCACTATTATGTCCCACTTTCAACATCCTCTTCTAAACAACTTCAACAGATCGGACGTCGATTCCAAGGCGAGCGAAGCCAAGGATCAAGATACGAAAGACGAGCGTGCGAGATGCAGCCCGCAGACCGATCGATCGGCGGAATCTGCGAGGAAGCAACGTCAGAATGCAGACACCGCGGTGCAAGTTACGGCTCAGGGCGCGTACAAGTGCGCCCAGTGCGATTACGCGACGACGAATCTTAATCGCATCAAGAAGCACGTGCGGAAGGATCACAAAACGTTCGGCGACCCGACCGAGATCGTGATCGCTGAGCTCAGCAAGACGCTCAAGGACGTGGCGAACAAACAGAAGATGCCGGCCTGCTACGCGATGCCGCAGGACATGAACTCGAATCCCGACAAGACCATAATGCAGCCGTTCTTGATCGAAGAGCAAGATCTGATGCAGGCGGGCGCCGAGTCCGGCTCGGCCAAGAGATTCGCCCCGGCTTTGGTTTATCTGCCGGTCAAATCCAGAATCAACAACGCCCTGACTGCTTCCTTCACTCTCACCCCCGCCTGA
Protein Sequence: MSSGVTTSHEASTMAETAELDSDGSSCGERDAWKRVRGDSADAGPKKRRKQTTPVRFSSSLVTDTDAREDEREDEGSEGKPSSRSPLPGNDHHHHHHDHHHDHPSKDENLNNEFRCQHCGRLFDSHETLAVHVDGEHGDATPGVAVKVEPAQQLDYTNESPISLLSVKNFATTWLASGSQQQQHVQSQTQMQPQSEETSWSSGPVNQIVTMTNHLQTLSGFPSALTQYMPLPSFPLTDPQHLPRSSLGSVPVKIFNPEAYCDMCNKEFCNKYFLKTHKANKHGIFVDSPAPSSAPIDNAGASHVFATNFHTGTVNVKLEPPATPPQKRFRNEESAVKKHKQKTNELDQQSDSQQILSQNEEDRETPRNSPNSMEVLLKVQEYGVEQEDATFMPAPRHLSPQSIQQARDSGFSADLLRRLGVINPEAFCEICCKEYCNKYFLRTHKMKRHGIIVQDNERPPSNTSATWHQVQTSPLNLIVTETAGSESNDRASEEHECKSCDIRFQTIGLYQAHCREMHESEEQVSPKQEYDLDCPDQRTDSISEDLQKLQTMIMQLNGLDSNKGLSCAVCGKECDSRSALRVHMATEHGVANEETSPPPPQEKSPAVILANFCTLCEKDYPSQEALKRHISEEHQPIVTNALPTLPPIVIASTSAGSTPTSQTSNSHTTTTMTTERKVTSLTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVICNICNKELCSKYFLRVHKHNTHGIVDENTTSSGAVTSSKQESYDASSGGEDSALKPEQLGDLSHRYFTHFTEVCPICNRRFRTVKWLKTHLMSDHGKAGSDKWRELEQQYQQIPKTSGRSVVPAKNIQPQAPSLKIPNGFEITQQIKTIDYSNLGNQVLSNLLGSSSEEHPLKNYRCAYCNFATPVLPFLFLHERSHVNPQENVLESDRTLQCPVCPQDFNQPELLHQHLLVKHQFPTIMSHFQHPLLNNFNRSDVDSKASEAKDQDTKDERARCSPQTDRSAESARKQRQNADTAVQVTAQGAYKCAQCDYATTNLNRIKKHVRKDHKTFGDPTEIVIAELSKTLKDVANKQKMPACYAMPQDMNSNPDKTIMQPFLIEEQDLMQAGAESGSAKRFAPALVYLPVKSRINNALTASFTLTPA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01267086; iTF_01268529; iTF_01269301; iTF_01271476; iTF_01270048;
90% Identity: iTF_01270048;
80% Identity: -