Pcub021379.1
Basic Information
- Insect
- Pseudomyrmex cubaensis
- Gene Symbol
- -
- Assembly
- GCA_014825685.1
- Location
- QVOA01019494.1:220618-223808[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.14 16 6.6 0.2 6 21 272 287 269 288 0.90 2 12 0.016 1.8 9.6 0.2 1 23 294 317 294 317 0.94 3 12 0.00013 0.014 16.2 1.6 3 23 331 352 330 352 0.96 4 12 0.0094 1 10.4 1.7 2 23 364 385 363 385 0.96 5 12 8.6e-08 9.4e-06 26.2 1.5 2 23 430 451 429 451 0.97 6 12 0.0098 1.1 10.3 0.3 1 23 456 479 456 479 0.87 7 12 0.9 98 4.1 1.6 2 23 538 559 538 559 0.96 8 12 1.3e-05 0.0014 19.3 2.6 1 19 568 586 568 588 0.96 9 12 0.16 18 6.4 3.7 1 22 626 647 626 647 0.95 10 12 0.0023 0.25 12.3 1.0 1 23 673 695 673 695 0.99 11 12 0.015 1.6 9.7 0.0 1 23 759 782 759 782 0.98 12 12 2.8e-05 0.003 18.3 5.0 1 23 787 810 787 810 0.98
Sequence Information
- Coding Sequence
- ATGTGTTCTTCGGTAAACGTGAATCTCTTTACAATGGCTCCTATAGACAGGTGGGACAATGCCTGTAGATTGTGTTCGGAAGAAAAGAACGAGATGTTGCCCATTTTCGGCGATGAAGGCATGCAGCGCAGGGTGGTGCACAAACTGCGCGCCATTCTGCCAGTATTGGTTTACAAAACCGATCCGTTGCCCAAGCAGATTTGCCAGTTTTGCGCAGCTAGGCTGGACGATGCTTATCAATTTAGGGAGTATTGCCTGAATGTCTACAGGAATATGCATGCTGCATTACTGGGTTATAAGAAGATTGAATCTGTACAGACTTTTTTCAATGCAATGAAGAACTCACCGGATCCATGTCAGTCACAGCTTTGCAAGGAGAAGTCAAGAGCTCCACCTCCATTAGTTCCTTTATCAATTGCCATGTCTCTTGATGAGTCAGTGAATTCTGTAAACCAAATTATTCAACATCAGCTCCAAAGTACTGGCATGGAAGCCCTGTCTGAACTACCATGTGAGGTAGAGATCAAGGAGATGAATGCAGATACAATTTTGAATACTGAAACTGTTTATGAACCGTCGTGTAAAAAACTCAAATATTTAGAAACACTTGACATAGGTTTACAACCAAACACGGAGACTGTTTCTATATCTGATACAGAAGAAGAAACAGTTTCCAAGGCAGAACATTCAGCAAAAAAAGAAGAGAAGCGGACCAGCATTTTGGAACAAGTACTGACTGGTAATTTAACAATGAATAATCATCAGAAGCTGCAACCTAAAACAAAATTAACATCTGAATGGTGGTGTGCACCTTGCAACAATTATTATAAAACGAAAGATAGTCTAATGAAACACATGCAATTAGACTGTCCACGTGTATATACTTGTAGAACATGTTCTTTATCTTTTGATTCCGTCGAAGGTCTGGCAAAGCATGAAGCTAGTAATCATTTACAAGTCAAAATAGATTTTGTTGGCAACTTGAAAGATTGTCATCAGTGTGACCGACAATTTGCAAGTTGGGAAATGTTAAGACAGCATAGATTACGGGATCATATCGCTGAATTAACCGAGATTGGAACTAACACAAGGTGTTCACTGTGCAATAGATTCTTTCCTACTGTAGAGAGTTATAAAAGTCACAAGCAATTGCATCAAACCAATGAAAATTTAATCCCGCAAAAACTGCAATCCGCAGAATCTGCATTTTCATCAACATCAAAGATAGCGGAAAATCTGAAAGAAGGTAAACGAGAAGAACACTTCTATGAAAATGTGAAGTCTCTTACATGTCCTACCTGTGGAAAGGTTTGCACCCAGCAAAGTGCATTGTCAAATCATATGCGCACTCACGAGCCAAAAAGACACAAATGCGAGATTTGTGGTCGGACATTTGGACTTTTTATACGCTTAGCGGCTCACAGAATGGCCGAGCATAATCAGCAGCCAACTATGTCGGCAATCGAGCAAGAAGAAGCATTAAATGCAGAAAGGGAAGCGAGAGAAGCTAGGAATCGTGGTATCAAGAATAAGTCTTATCCTGAGCTAATAGAGAAGAACGATATTTTGGCGGAAGATGAGTCCTCAAAGCGCAATTCTAAGAACGTAGCAAGATGTGGCATTTGTCTACAGTGGTTTAGCGATCACACGACAATGTTGACACATCTTCAGACACACTCGGATACTTATTCCCATAAAAACTTTTCTTGTCATATATGTAAAAAGTCATTTAAGGACCATAGCCAGCTGTTAAGACACGAAGTATGTCACAATAAACGTTCATCTCTCGATTATGTCTCACTGTACACACCTAATGTTGGAAACAAATCGCTTACGGACAAAACTCATCAAACGACACACACGGTGGATAAGACTTATCATTGCGCAAAGTGTAATAAAATCTTTTTCAAAGAAATGTCATTCCTTGCTCATCAATGTACAGGTGAACCACCTCATGCAAATATAGCCACTGCCAAATCTGTACAGAAGACGTCGTCTCACAGTAATAATAAGAGATACAAGTGTTCCAAATGTGAGGCGTCATTTCTAACTTCACAGTCCCGAAATGCTCATATGAGAATACACGTCGACAACTCGCATAGCAATACGGCACAGACACCAGAGATAAAGATTGAAACAGATGATCAAGAGATGCCAAAATTGTGTCCGGAAACAGTGGAGTACAATGTAACCCCTATCGAGCCAAAAATTGAAATTAACGAGCAAAGTACACCTCCGCCTCTTAAACGAACTTTAATTAAAACCGCTAGCGGATATCGATGCGGTGTATGTCAATCACCATTCGTGTCTAGAGAGTTAGCAGTAGCACATTTGAGGTCTGCACATCCCATGATACCGTATCAGTGCCCTTATTGTAAAAAGCGCTTCACGACGCAGTACATTTTTACCCATCACATTAAAACGGAACATCCTGACGAACCCGAGAAATAG
- Protein Sequence
- MCSSVNVNLFTMAPIDRWDNACRLCSEEKNEMLPIFGDEGMQRRVVHKLRAILPVLVYKTDPLPKQICQFCAARLDDAYQFREYCLNVYRNMHAALLGYKKIESVQTFFNAMKNSPDPCQSQLCKEKSRAPPPLVPLSIAMSLDESVNSVNQIIQHQLQSTGMEALSELPCEVEIKEMNADTILNTETVYEPSCKKLKYLETLDIGLQPNTETVSISDTEEETVSKAEHSAKKEEKRTSILEQVLTGNLTMNNHQKLQPKTKLTSEWWCAPCNNYYKTKDSLMKHMQLDCPRVYTCRTCSLSFDSVEGLAKHEASNHLQVKIDFVGNLKDCHQCDRQFASWEMLRQHRLRDHIAELTEIGTNTRCSLCNRFFPTVESYKSHKQLHQTNENLIPQKLQSAESAFSSTSKIAENLKEGKREEHFYENVKSLTCPTCGKVCTQQSALSNHMRTHEPKRHKCEICGRTFGLFIRLAAHRMAEHNQQPTMSAIEQEEALNAEREAREARNRGIKNKSYPELIEKNDILAEDESSKRNSKNVARCGICLQWFSDHTTMLTHLQTHSDTYSHKNFSCHICKKSFKDHSQLLRHEVCHNKRSSLDYVSLYTPNVGNKSLTDKTHQTTHTVDKTYHCAKCNKIFFKEMSFLAHQCTGEPPHANIATAKSVQKTSSHSNNKRYKCSKCEASFLTSQSRNAHMRIHVDNSHSNTAQTPEIKIETDDQEMPKLCPETVEYNVTPIEPKIEINEQSTPPPLKRTLIKTASGYRCGVCQSPFVSRELAVAHLRSAHPMIPYQCPYCKKRFTTQYIFTHHIKTEHPDEPEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01271455;
- 90% Identity
- iTF_01271455;
- 80% Identity
- -