Pcub001792.1
Basic Information
- Insect
- Pseudomyrmex cubaensis
- Gene Symbol
- -
- Assembly
- GCA_014825685.1
- Location
- QVOA01013195.1:22351-23784[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.082 8.9 7.4 0.7 2 23 173 195 172 195 0.87 2 9 0.0048 0.52 11.3 0.5 1 23 207 230 207 230 0.93 3 9 0.0016 0.17 12.8 5.6 1 23 243 266 243 266 0.95 4 9 2.9e-05 0.0031 18.3 4.6 1 23 272 294 272 295 0.96 5 9 5e-05 0.0054 17.5 0.9 2 23 301 323 300 323 0.96 6 9 0.00026 0.029 15.2 1.9 1 23 328 351 328 351 0.98 7 9 3.2e-07 3.5e-05 24.4 0.5 2 23 358 379 357 379 0.96 8 9 0.00015 0.016 16.0 2.3 1 23 385 407 382 407 0.91 9 9 1.8e-05 0.002 18.9 1.0 1 23 413 435 413 435 0.98
Sequence Information
- Coding Sequence
- ATGAAGAAGTGGCAGATTTTGGAATTCGACGGCAAGCCGTATTACGCGTTCATACCGGAAGAGGACGCGCCTCTGATAGACGTAGACGACGAGGACGTGCATATGCGCGCGGAGGATTCGTCGTTCGAGGAGCCGGAAAGTCACGCGGACGAGGAAGAACATGACGTCAGAAAATCGAGCAGGATGAAGAAGGAACAGTTTTTCAAAGAGGAAGTTCCGTGTTACGATTCAATAGAAGAGAAATTGCAAGAGGTTCTTAATGAAGGTTACGATGAGGTAAAACCGATGTTGAACGGCGAAGCTACTGACGACGAGAATAACGAATTCTATCAGTTAAAGGTGCAGGGCAATAACGTGATCATCGAGAAACTTTTGTCCACGAAGGAGGAAGACCATCAAATGGAGAACGCGTCGGACGATGAGGGAGAGGTGGAGTATCTCGAGGAAGAACTGGTGACCAACTCTCTCGACGACAACGTGATATCCGTACAAACTCCTTCAAAGGGTGAGTCAGTGAAGTGCAAAGTGTGCTCGGAGACATTCGTCACGGAGATATCCTGCAGAAAGCACGTAGCGTGGGTCCACAAGAAGCAGAAGTGTATAAAAGATAACGGCAGTTTTCTGTGCGCCGTGTGCGATTACAGCACCACGAAGAAGGCTCAGTTCGTCACGCATCTGGAGAGAAATCACGAGATCTGGCCGAGAAAACGGTCGATGAAGAGATTGTTTCCGTGCACAGTTTGTGGCTTTACCTGCAGATCGAAGCACTCTTTGCAGTCTCACTTTATCAGAAAGCATACCGACAAATACGAGTACCAGTGTAACTTCTGCTCGAAGAAGTTCAAGGTCAAGGGCGATCTGACGAATCACGTGCGATTCCATCACAAGGAGAAGCCGGTCAAGTGCGACGTGTGCGGCAAAATGTGTCAGAATAGCAGTTCTCTTTACGTGCACCAGAAGTGGGCGCACTTCAAGCCCAAGTTCGAGTGCAACATCTGCCACAGGCGCATGGTCACGCAGGAGAATCTGGATCAGCATCTGAAGACGCAGCACGAGAAGCGCGACAAGATCGTGTGCGCCGAGTGCGGCAAGACCTTCACGAAGAAGGACTCGTTCAAGAGACACATGGTCGTGCACACGGGATGCAAACCGCACTCGTGCATAATCTGCAGCAAGCCGTTCGCCCGGAGATCGCAGCTGCGCCAGCATCTGCTCATTCACACCGGCAAGCGACCGTTCGTGTGCGACATCTGCGGCAAAGCGTTCACGCAAAAACCGGGTCTGATCTGTCACAGGAAAACTCATCCCGGCACCCATCCGCCCTTGCCCGTTATGCCGATCGGGGACATCGTCAAGGAATTCACCGAGGGATACGCGCAGGAGAACGAGTCTAACGCGCTCGAGAACGAGGAGAAGATCGACGAGGAAGCGTGA
- Protein Sequence
- MKKWQILEFDGKPYYAFIPEEDAPLIDVDDEDVHMRAEDSSFEEPESHADEEEHDVRKSSRMKKEQFFKEEVPCYDSIEEKLQEVLNEGYDEVKPMLNGEATDDENNEFYQLKVQGNNVIIEKLLSTKEEDHQMENASDDEGEVEYLEEELVTNSLDDNVISVQTPSKGESVKCKVCSETFVTEISCRKHVAWVHKKQKCIKDNGSFLCAVCDYSTTKKAQFVTHLERNHEIWPRKRSMKRLFPCTVCGFTCRSKHSLQSHFIRKHTDKYEYQCNFCSKKFKVKGDLTNHVRFHHKEKPVKCDVCGKMCQNSSSLYVHQKWAHFKPKFECNICHRRMVTQENLDQHLKTQHEKRDKIVCAECGKTFTKKDSFKRHMVVHTGCKPHSCIICSKPFARRSQLRQHLLIHTGKRPFVCDICGKAFTQKPGLICHRKTHPGTHPPLPVMPIGDIVKEFTEGYAQENESNALENEEKIDEEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01270018;
- 90% Identity
- iTF_01270018;
- 80% Identity
- -