Pcub001790.1
Basic Information
- Insect
- Pseudomyrmex cubaensis
- Gene Symbol
- -
- Assembly
- GCA_014825685.1
- Location
- QVOA01013195.1:16421-17783[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00045 0.049 14.5 5.2 2 23 78 99 77 99 0.97 2 9 1.3e-07 1.4e-05 25.6 1.0 1 23 101 123 101 124 0.96 3 9 0.0005 0.054 14.4 2.5 1 23 129 152 129 152 0.97 4 9 6.6e-05 0.0072 17.1 4.6 1 23 158 181 158 181 0.95 5 9 0.0038 0.42 11.6 3.3 2 23 189 211 188 211 0.95 6 9 0.0028 0.3 12.0 0.4 1 23 216 238 216 238 0.97 7 9 0.00022 0.024 15.5 1.3 3 23 246 265 245 265 0.98 8 9 6.1e-05 0.0066 17.2 0.3 1 23 271 293 271 293 0.97 9 9 6.9e-05 0.0076 17.1 0.5 1 23 299 321 299 321 0.97
Sequence Information
- Coding Sequence
- ATGTTACGAAGCGTAGCGGATCTGTTAAACTTCGAGTTCGGTGTTGTCGAAATGGTGATAGTGACTGGCGGAGAGGCAAAAGTGAAAAAAGAGATAAAAGAGGAAGCACCAGAAGAAGGACGAGTGAAAGATTTGACAAAAGAGCAAGTATCAGAAGAGGCGAGCACGAAGATAGAATTGGTTCCTCAAATTGTATCCAAGAAGACTGAGTCGAAGGCCAAAAGAACGGTGGAGTGCGACCACTGTCACCGAAAGTTCTTGAAGAAGAGCAACCTCGCCACACACATGAAGCAGCACAGGTACCAGTGCCCCGACTGTTCGAGGAGTTTCAGCCGCCGGCCTTACCTGATCGCCCACATCGAGAAGCATCACATGGAGCAAGTGTACGAATGCAGCAAGTGCAAGTACAAGAGCAACAACAAGGGCACTCTGAAGAATCACTACATACGGCTGCACACGAGCAATTTTGACTACGCGTGTCACATATGCGGCAAGCAGTTCAAGATCAAAAAGACTCTGAATCACCACGTGAAGCAGAACCACAGCGAAGTTGCCCCGCCTATCGTGTGCGACGTGTGCGGCCACTTGTGCAAGAACCTCCACGCGCTCAAGGCGCACATAAAGTACAAGCACGACAAGCCGGCGTTTACCTGTCGGATATGTCGACGGGGCATGACCACGCAGGAGAATCTCGACCAGCATCTCATGTGGCACGAGACCAAGGAGAAGGTGCTGTGTTCGTCCTGCGGCAAGAGGTTCCGCCGCCGCGATCTCGACTCGCACATGAGAGTGCACACGGGGGTGAAACCGTTCCCGTGTCCCGTTTGCAGCAAGACGTTTCGACGCCTAACCACGCAGGAGCAACACGTGTTGATCCACACCGGGAAGAGGCCTTACATCTGCGATATTTGCGGCAAGGCGTTCGCCCAAAAGCCCGGTTTGATATGTCACAGAAAGAGACACCCGGGCCCGCTGCCCCCCTTACCTGTAATATCCATCAAAAACATTGTCACGGAGTTCACGAAGGAGTACGCGACGAAAAAGGCGGATATCAAGAATGAATAA
- Protein Sequence
- MLRSVADLLNFEFGVVEMVIVTGGEAKVKKEIKEEAPEEGRVKDLTKEQVSEEASTKIELVPQIVSKKTESKAKRTVECDHCHRKFLKKSNLATHMKQHRYQCPDCSRSFSRRPYLIAHIEKHHMEQVYECSKCKYKSNNKGTLKNHYIRLHTSNFDYACHICGKQFKIKKTLNHHVKQNHSEVAPPIVCDVCGHLCKNLHALKAHIKYKHDKPAFTCRICRRGMTTQENLDQHLMWHETKEKVLCSSCGKRFRRRDLDSHMRVHTGVKPFPCPVCSKTFRRLTTQEQHVLIHTGKRPYICDICGKAFAQKPGLICHRKRHPGPLPPLPVISIKNIVTEFTKEYATKKADIKNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01270005;
- 90% Identity
- iTF_01271439;
- 80% Identity
- -