Pcub018843.1
Basic Information
- Insect
- Pseudomyrmex cubaensis
- Gene Symbol
- bab2
- Assembly
- GCA_014825685.1
- Location
- QVOA01001000.1:53408-54986[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.3e-14 4.4e-11 42.7 0.1 2 42 316 356 315 358 0.93
Sequence Information
- Coding Sequence
- ATGAGTGATCCATCGTCTCACTATCGTCTCCGTTGGAACAATCATAAAAGTAATATGATAAACATCTTTCACGATTTATTAAAGAAAGAAGCTTTTACCGACGTGACTCTTGTCGTGGAAGACTATAAAATCAAATGCCACAAACTGATCCTGGCCGCGTGTTCGCCTTACTTACAAAAACTGCTCCAAGAATCGCCATGCAAGCATCCGACGATCATACTCAAAGACGTCAAATATACGGATTTGGAGATATTGATCGACTTCATGTATAACGGCGAAGTGAGCGTTATGCAAGATCAGCTTGGCAGTCTACTGAAAACCGCGGAAGTTCTAAAGGTGAAAGGTTTAGCAAATATGAACGATAAAGATGATGATTATAGAACCTCGACCCCCCAGCTCAGGGATGGGTCACCACAGTCCGCTATCAGTACCACAAACAGGGATAAAGAAATGGCGTCTAGTAGCAGCAATTACTTGTCACCGCCGCACTCCACCTTTAGCGATAAAAGCCAATATTTACCGAGAGTCGATGCTTCTTCCTTGTATAATTCTCCCCCTTGGAGTGAATCATGGCACCGCCACATGATTGCACCTGAGAGTACTCATGTGGAGTACAACCTACCTTACTCGGGTACCGCCTACATGAACCCCATCATTGACTCTCTAATCGCTCATGACTTAAAATCAAGCGATACGCCGATACTGCGTACGGCACTCAATTGCTCGCGTTCTGAAAATCTCTCCACTCATTCTGTGAAAAACTTCTCCGATAGTATAGACCTGACTTACAATCAGGGAATCAGAAGAGAAGTAGTACCTAACCGGGTTTTCAGCCCGCTCGACATGGATGAAGAAGAGAAAAAATCGTCGAAACAGAGAGATACAACAAAGGAGAAATCAGCAGATCTGCCGAAACCCGAGTGGAAACGATACAAACAGTACAGCCGGGCGGAAATCGATGCGGCGATAACAGCGGTGAGAGAGGGCATGAGCGCGGTGCAAGCAGCCCGTAAGTACAATGTACCGTCGCGCACCCTTTACGATAAGGTGAAGAAACTTGGTATTACGCGGGTCAAACGCTCGTCTACTACCAATGGCAACAATACGGCAAGTTGTTATTACGATAACGACGATAACTTGAACGGCATTTATAATAACACTCCGTCCGAAGCTGACAACGAGAACGACTGTAACGTCAAGAAAATAAAACAGGATTACGACTCGGCGTCAGACTCCGCCGCACGTTGCGTTATAAGTCCGGTTATACGTTATGCTAATCAAATGCAGCAGCTAAGTATCAAAGACGAGAGAAGTACGGCGGAGAAGTACGAGGTGGAGGATCTCTCGATGCCGAGTCGTAAGTTTGACATGCCGGTAATGACAAGAAAACCCTCCACGCCGGAGATCAAGGAAGAGACACAGGACGCCGATCAGCAATCGGACAATGACCAGAATTAG
- Protein Sequence
- MSDPSSHYRLRWNNHKSNMINIFHDLLKKEAFTDVTLVVEDYKIKCHKLILAACSPYLQKLLQESPCKHPTIILKDVKYTDLEILIDFMYNGEVSVMQDQLGSLLKTAEVLKVKGLANMNDKDDDYRTSTPQLRDGSPQSAISTTNRDKEMASSSSNYLSPPHSTFSDKSQYLPRVDASSLYNSPPWSESWHRHMIAPESTHVEYNLPYSGTAYMNPIIDSLIAHDLKSSDTPILRTALNCSRSENLSTHSVKNFSDSIDLTYNQGIRREVVPNRVFSPLDMDEEEKKSSKQRDTTKEKSADLPKPEWKRYKQYSRAEIDAAITAVREGMSAVQAARKYNVPSRTLYDKVKKLGITRVKRSSTTNGNNTASCYYDNDDNLNGIYNNTPSEADNENDCNVKKIKQDYDSASDSAARCVISPVIRYANQMQQLSIKDERSTAEKYEVEDLSMPSRKFDMPVMTRKPSTPEIKEETQDADQQSDNDQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01268377;
- 90% Identity
- iTF_01267667;
- 80% Identity
- iTF_01267667;