Pcub013754.1
Basic Information
- Insect
- Pseudomyrmex cubaensis
- Gene Symbol
- lola_1
- Assembly
- GCA_014825685.1
- Location
- QVOA01016355.1:219-2575[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.4e-06 0.0019 18.2 0.0 5 37 187 219 186 225 0.83 2 4 4.3e-10 3.6e-07 30.2 0.0 2 40 234 271 233 277 0.89 3 4 0.26 2.1e+02 2.1 0.0 21 34 304 317 290 323 0.80 4 4 2.3e-10 1.9e-07 31.1 0.1 4 38 348 382 345 388 0.90
Sequence Information
- Coding Sequence
- ATGAACGAGCTTACGTGCATGAGGCAGCACGAGGGCAATCACATTTACCGCTTTAAATGGAACGATTATCAAATTCATCTAGCTGATGTTGTGCGACAACTGTTGCAGGAAGATTGTATGGTGGACGTTACACTTTCCGCATCAGGCGAACGTATTCATGCACATCGCATCGTGTTGTGTGCATGTAGCACTTTGTTCCAAGAGATTCTTAGTCAAGTTACAGAAGATGATCCAACCATTATTCTTAGTGACATATCTTCTCAGGATATAAGGTCCATCATTGAATTCATATATCGTGGTGAGGTCCGAGTTCCTGTTGACAATATCAGCAGTTTACTTGAAGCTGCACAGTCATTAAAAATAAGTGGTCTTGTTGATATAAATGGACTTGAGGAAAATCAAAGGATCATAAACAGACAAGATTTTATAGAAGAAAATGCAACAGATGAAACTGAAGAAAATAAATCCAAGAACTTACAAAGTCAACAAACTATTGAGAATAAAAAAAAACGTCACAAGATCCGTGAAAGTACAAAGAAAGACTATAATGATGTTATGTTACAATCTGCAATTGAAGATTTGAAGAAAGGAATGCCTTTAATAGATGCTGCCACCAAGCATAATATACCTCGCTCAACATTGTACATGCGAGCAAAAGCATTAGATATACATTTAAATGCATCAAGAAATGGATATCCTGAAGAATGTATGAATGCAGCAATGTCTGCTGTAATGAGTGGTTCAAGCTTGCAGCATGCATCGGAAGTGTATAGGATCCCTAAAACTGTATTATGGAGACGTATGCAAAAAAAAGGCTATCAAATCTTGCGTCCTGAAATGAAGAGATCGTATGCTTTAGACACAAGAGAGGCTGCTGTTAAAGCTTTAGAGAGAGGAGAGAATCTCACAAAAGTCGCACTAGAATTTAAAATACCGAAGACTACATTGTTTAGAGACAAAGCGCGATTAGTGAATCAAGGTAAATTACCGTTGTCGTTTTGGAAGAAACGTAAAACGGAGAATGAGGAATTAAAAAAATCGCGTTTGGAAAAAGCTGTGGCTGCCTGCAAGGGTGGTAAAATGTCTCAAGCTGCGGCGTCTATTACATATCAAATTCCGAAAACTACGATATGGCGAAAGCTTCAACAAGATGGGAAAAAAATGGAAAAATCAAACATAAAAAAAGAAAAAACGATCGAAAGACAGCAACACGATAATGAGATGAAAACACAAGAAGATTCTAACTTCAACTATTGTGAGGTTTCGTCAGAAATACCTGTAACTTATATAGATGAGAGTAGTATACCTGAGGACTCCGTAATAATCTTGACAACAGAAGATTTAAATGAATTAAATTTAGAAGAAGGAAGACAAATTATTGTAAATTCTGAATCTGGACAAGAATACGTACCATGCGCAATAAGTATCGAACAAAGTTCAAATTATTCAGAAGACGCGGGTTAG
- Protein Sequence
- MNELTCMRQHEGNHIYRFKWNDYQIHLADVVRQLLQEDCMVDVTLSASGERIHAHRIVLCACSTLFQEILSQVTEDDPTIILSDISSQDIRSIIEFIYRGEVRVPVDNISSLLEAAQSLKISGLVDINGLEENQRIINRQDFIEENATDETEENKSKNLQSQQTIENKKKRHKIRESTKKDYNDVMLQSAIEDLKKGMPLIDAATKHNIPRSTLYMRAKALDIHLNASRNGYPEECMNAAMSAVMSGSSLQHASEVYRIPKTVLWRRMQKKGYQILRPEMKRSYALDTREAAVKALERGENLTKVALEFKIPKTTLFRDKARLVNQGKLPLSFWKKRKTENEELKKSRLEKAVAACKGGKMSQAAASITYQIPKTTIWRKLQQDGKKMEKSNIKKEKTIERQQHDNEMKTQEDSNFNYCEVSSEIPVTYIDESSIPEDSVIILTTEDLNELNLEEGRQIIVNSESGQEYVPCAISIEQSSNYSEDAG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01267677;
- 90% Identity
- iTF_01267677;
- 80% Identity
- iTF_01267677;