Pcoc006852.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pseudomyrmex concolor
Gene Symbol
nfxl1
Assembly
GCA_014839585.1
Location
QVOB01024271.1:2428-5277[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 1.1 1.3e+04 -3.3 1.1 15 19 127 131 126 131 0.81
2 19 0.15 1.8e+03 -0.5 0.8 4 10 162 168 161 168 0.95
3 19 5.8e-08 0.00069 20.0 15.1 1 18 176 192 176 193 0.98
4 19 4.1e-07 0.0049 17.2 12.4 1 18 230 246 230 247 0.93
5 19 2 2.4e+04 -4.6 1.0 6 10 272 276 272 276 0.81
6 19 3.6e-05 0.42 11.1 11.1 1 19 282 301 282 301 0.95
7 19 5.8e-06 0.068 13.6 9.5 1 18 337 354 337 355 0.97
8 19 0.0086 1e+02 3.4 7.6 1 12 389 400 389 400 0.94
9 19 2 2.3e+04 -4.1 1.6 6 10 410 414 410 414 0.95
10 19 7.6e-07 0.009 16.4 14.4 1 19 420 438 420 438 0.91
11 19 1.4 1.7e+04 -3.6 0.7 6 10 466 470 465 470 0.88
12 19 0.00011 1.3 9.5 9.8 9 19 485 495 483 495 0.90
13 19 0.00068 8 7.0 8.1 1 12 505 515 505 515 0.95
14 19 0.89 1.1e+04 -3.0 5.8 14 18 552 556 552 557 0.89
15 19 1.7 2.1e+04 -3.9 0.4 8 11 573 576 573 576 0.77
16 19 0.003 35 4.9 8.3 1 12 593 604 583 604 0.80
17 19 2 2.4e+04 -4.2 1.2 14 18 617 621 617 622 0.84
18 19 0.024 2.9e+02 2.0 16.3 3 19 634 650 633 650 0.92
19 19 0.00018 2.1 8.8 13.7 1 18 695 714 695 715 0.85

Sequence Information

Coding Sequence
ATGCAGAAATTTAAAATAGCTCAGGCACAAAATAAGCTGTCTATTGAAAGACACTTGGAAGCTATTGCATTATTGAATTCGTCTAGTGAAGACGAAGATGAAGCATCAAATGAGGAAGACGCGCAACATATAGTGGATAAAGTAATATCCGCGTATCAAGGGCAAAGAGCAGATGCAGAGAAAGTGATATCGTATTTAATTAATTCTCTTCAATCCAGCAGTGTTGTCTGCTTGATATGCATATCAACTGTCAAGAAGACCGATCCGATATGGAACTGCTGCAAGTGTTATGCATTTATGCATATATCCTGTATCTTACATTGGATCAACGACAGTTTGAGATACAAACGGGATAAAGGAATTACACCAATTTGGGCATGTCCAAAGTGTCGTACGGAATATGAGCAAGACCAGGTTCCGAGATCGTATGAATGTTTCTGTAAAAAGCTCGTAGATCCCCCGTATCAACCGTGGAGCATTCCGCATTCTTGCGGCGAAACGTGCGGCAAACTTCTGCAACCGGAATGCGGTCACAAATGTGTGCTGCTTTGTCATCCCGGTCCGTGTCCGCCGTGTGCAAAGACGATTAGTGTCAAATGCTACTGCGGCAAGCAGCCGGCACAGCTACGTCGATGCAACGCCAAAAATTGGAGCTGCAAAACTATATGCAACAAAAAATACGAGCTGTGTTCGCACTCTTGCAATAGGTTGTGTCACTCCGGAGAATGTACTCCCTGTGAAGAAATAATATTATTGAAATGTCGTTGCAAGAGCAATGAGAAAGAAGGGAGATGTTGCGAAGGTACGTGGATCTGCGACAAGCCCTGTTACAGAAAATTCTCCTGCAATATACACGTTTGCAAGAGCACTTGTCATTCACCTGGCGACTGTGACAATTGTCCTTTGGAGAAAAACCGAACTTGTCCATGCGGAAAGAAACGATACGAAGTTTCGTGCGAGCAGCAGCAAGTACCGACATGCGGCGATACTTGCGGCAAGCTGTTGGATTGCGGATCGCATTACTGCAGCATGAGGTGTCACACTGATCGTTGCGGTCCGTGCTTAGAAGTGGTGACCAAGTCCTGTAGATGTGGCAGTTATACGAAGGAACTGGCCTGTGTGAAGGAATATCACTGCAACAAAAAGTGCACGCAGATGCGCCAGTGCGGTAAGCACCTGTGCAACAGGAAGTGTTGCGATTGCATATTGAAGAATACGCTCAATCTCTGCGAGAAAACGTGCGACAATACGCTCAAATGCCGTAAGCACAAATGCGGTGCTCCCTGTCACAGTGGTCCGTGTTATCCGTGTACCAGAACGGATGTCATACAATGTCGATGTGGCAGTAACAAAATAACGGTGCCGTGCGGCTCCAAGAGAAAGAAACCACCACCGTGTAACAAACTCTGTAAAATTCCACCTATCTGCCATCACAGCAAGCAGGAAACACACAAATGTCATCAAGGTCCGTGTCCACCGTGCAAGAAGATTTGCGGCATCACGTACAAGAGATGCGGCCATTCTTGCCAGGCCACTTGCCACACCAAGGTCTACGTGAAGGTCTACGTTAAAACACAACCGGTCGGTTATCCTTGGGATAACAAACAGGAAAGGATAACATCAAAGGACGGTATAAAGCAACTGAAAACTTTACCGTGTCCACCGTGCGAGGTTTCCGTGCCCGTGACTTGTCTCGGAGGTCACGAGACGCTTCTTCGACCGTGTCACTTGTCGAGATCAAGTTCTTGCGGCAGAATCTGCGGACAACTACTGTCGTGCAAGAATCACACCTGTGAAATGATCTGCCACAAGATACGAAACAGCGAGAGTGAATCTGACAGTGGTACTCCGTGCATGGAATGCGACAAGTCATGTCAGTTTGCGCGTCCGCAGGGTTGCACACACCCGTGTCTACAACCTTGCCATCCGAGATCGTGCAAACCGTGTAAGCAATTGGTGCGAATCTCATGCCATTGCGGCATCAGCACCCTTTACCGGCATTGCGTAGATCTGACGTCCGCGACAATTGAGAAACGAGACGAGTTACTCAAATGTGGAAATCAATGTCCTAAAAATTATTCTTGCGGCCATCGCTGCGTCAACGATTGCCACCCGGGACCATGTAAAGGCGAAGAAGAATGTAGCAAGAAGATCAGATTATGGTGCAAGTGTAAACGGATAAAAAAAGACTTTCTTTGTTTGTTACTCCAGAAAGAACAGATCACTGTAGAATGTGACAACACATGCGAGTCGTTGATGAATGAAAGAAAAGAAGCTGAGGAAGCTAGGATAGCAAAGAAGCGAGAAGTGGAAGAGCTGCGCAATCGAAAAGAGATTGAGAAATTCGAGAAGAAGTTCAAGCCACGACGAAAGAAGAAAGACAAGTACGAGAAGTCGGAGCAGTTGCGAGAAAACGTGGGAACGAGAGCTTGGAGATTTTTCAAAGGCTTCTTTTTTAATTGGAACAACGTTTCATTAATCATTTTATACTTTGTACTCGTTGTAGCCTGCGTAATATGTATAGTAGCATCAGTGGCAATATGGAATGACGCAAGTGAATCCAATTTGCAAATTGTAGACATACAATGA
Protein Sequence
MQKFKIAQAQNKLSIERHLEAIALLNSSSEDEDEASNEEDAQHIVDKVISAYQGQRADAEKVISYLINSLQSSSVVCLICISTVKKTDPIWNCCKCYAFMHISCILHWINDSLRYKRDKGITPIWACPKCRTEYEQDQVPRSYECFCKKLVDPPYQPWSIPHSCGETCGKLLQPECGHKCVLLCHPGPCPPCAKTISVKCYCGKQPAQLRRCNAKNWSCKTICNKKYELCSHSCNRLCHSGECTPCEEIILLKCRCKSNEKEGRCCEGTWICDKPCYRKFSCNIHVCKSTCHSPGDCDNCPLEKNRTCPCGKKRYEVSCEQQQVPTCGDTCGKLLDCGSHYCSMRCHTDRCGPCLEVVTKSCRCGSYTKELACVKEYHCNKKCTQMRQCGKHLCNRKCCDCILKNTLNLCEKTCDNTLKCRKHKCGAPCHSGPCYPCTRTDVIQCRCGSNKITVPCGSKRKKPPPCNKLCKIPPICHHSKQETHKCHQGPCPPCKKICGITYKRCGHSCQATCHTKVYVKVYVKTQPVGYPWDNKQERITSKDGIKQLKTLPCPPCEVSVPVTCLGGHETLLRPCHLSRSSSCGRICGQLLSCKNHTCEMICHKIRNSESESDSGTPCMECDKSCQFARPQGCTHPCLQPCHPRSCKPCKQLVRISCHCGISTLYRHCVDLTSATIEKRDELLKCGNQCPKNYSCGHRCVNDCHPGPCKGEEECSKKIRLWCKCKRIKKDFLCLLLQKEQITVECDNTCESLMNERKEAEEARIAKKREVEELRNRKEIEKFEKKFKPRRKKKDKYEKSEQLRENVGTRAWRFFKGFFFNWNNVSLIILYFVLVVACVICIVASVAIWNDASESNLQIVDIQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01268678;
90% Identity
iTF_01269484;
80% Identity
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