Pcoc004073.1
Basic Information
- Insect
- Pseudomyrmex concolor
- Gene Symbol
- stc
- Assembly
- GCA_014839585.1
- Location
- QVOB01009857.1:949-5324[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.3 1.5e+04 -3.5 1.1 15 19 303 307 302 307 0.82 2 13 0.33 3.9e+03 -1.6 0.5 4 10 336 342 335 344 0.86 3 13 2.7e-06 0.031 14.7 14.4 3 18 351 366 338 367 0.84 4 13 3e-06 0.036 14.5 13.7 1 18 403 420 403 421 0.96 5 13 0.00033 3.9 8.0 7.5 1 19 459 477 459 477 0.88 6 13 0.69 8.2e+03 -2.6 0.9 5 10 506 511 506 511 0.95 7 13 1.2e-05 0.14 12.6 12.3 4 18 524 538 517 539 0.86 8 13 0.0069 81 3.8 11.3 1 11 579 589 579 601 0.88 9 13 2.6e-09 3.1e-05 24.3 13.8 1 18 606 623 606 624 0.97 10 13 2 2.4e+04 -4.2 0.8 6 10 653 657 653 657 0.89 11 13 0.79 9.3e+03 -2.8 4.3 14 19 676 681 669 681 0.75 12 13 1.1e-07 0.0012 19.2 8.9 1 16 717 732 717 742 0.88 13 13 4.1e-05 0.49 10.9 14.9 1 19 749 768 749 768 0.96
Sequence Information
- Coding Sequence
- ATGGCCACCTGGGACGGTTCGTGCCCAGAAGATCCAAATACCCTCGTATACAGCAACCAGAATACATCTGGCAACGCTGCGAACAACTGGCCACAATTCGCCAACAATATCGCGTGTCTGCAGAACGTGCCTGCGGAAAGTTATTACACAAGAAGCGGCAATCGGTATTCATATCAACAAGAATGCGAGCAGACCGGATCTACTGTCGCGTTTTGGCATTCGTCGAACCCAATGTCTTTAGGACATAGTCACCAGGAACATATATTGCCAAACCACGCGTTTGTCAACGATGCACAAATGTCAAGCAACAATTTCCAACACTCCATAAGTGATATCCCTTCGACATCTTTGCACAATGTGTCGTCTTCTTCCGGTGACAATTACAATAAAGCAAAGTGGATGAACAATCCGATGATCAGCAAGTATGTTCCAGCCACAGGAAGCGATAGTGTTTTGTTGAACATAGTAGAGAACTCAACTTTGCATCCTTCAGCTAATGAATTTGTGCCGAACAATATCAAGCCAAGGAAAGAGAAATTTAATAAAAGGAACAGTCCTAAACGTAGAACGGCAGCAACTTTGATGAAGTGCGCATATAGAAAAAATGAAGCGATATCAAATCAAAAAGAGACACAAGTAGATAATTGGAGAAATAGAACAGAGAAAGATGAGATGGCACAAGCGCATAAAAAAAATCCCAAGAAAAAATACGAAAATGATAATCATGTGAGTCAAAGAGACAGATTAACGGAACAGTTGAACAAAGGAACATTGGAGTGTCTAGTTTGTTACGAGACTATCAGACAAACCGATTATGTTTGGTCCTGCAGTAATTGTTATCATGTGTTGCATATGAAATGCATCAAGAAATGGGCAAGATCCTCACAAAGTGACAACGGTTGGAAGTGTCCGGCTTGTCGGGACGTTAGCTTCCAAGTTCCTGAAGATTACTTTTGCTTTTGCGGAAAGATGAAAATGCCGCAGTGGAATCGCAGAGACGTGGCGCATACATGTGGCGGGATTTGCGGTCGAAAATTGACAAAAAATTGCAATCATAAATGCATTTTGCTTTGCCATCCTGGCTCTTGTCCGCAGTGCGAGGCAATGGTGACCAAGTATTGCGGCTGCGGAAGAACATCGCAGATGCTTCTGTGCAGCACTCAACAGTTGTTATTGTGCGATTCGATATGCAACAAGATTCTGTCGTGCGGAAAACATTTCTGCCAGAAGAAATGCCATCATGGAGAGTGCGAACTTTGCGACAAAACTGTACAACAAACCTGCTTTTGTGGAAAAAAAACACAAGAAGTGCTTTGTCGAGCCAACGTCACGGATATGTATTGCTGTAACAATGTCTGTAATAAACCGTTGGACTGCGAAAAGCATTATTGTCAAAAGGTCTGTCATTTGGAGTCATGCGAGTTTTGCAGCCTGGCGCCGGAAAGAGTTACTGTGTGTTGCTGCGGTCAAACATCTTTAACAGAAAAGAGAGAGAGCTGTTTAGATTCTGTGCCCACCTGCAATAAAATCTGTTCCAAGTCTCTGGCTTGCGGCCGACCTAGTAACCCGCATACCTGCAAGATGCAATGTCACACTGGCGATTGTCCCGAGTGCGATCTAAGCACGGAAGTCAAATGCCGATGTGGTAACATGAATCGTGAGATTCCTTGCCGGGACTTGACGAGCAAGGCCGATGACGCGCGTTGCGCGAAGCGTTGCAAGAAGAAGAGGTCTTGTGGCAAGCATAACTGCAACCAACTCTGTTGCATCGATATCGAGCATATTTGTCCGTTACCGTGCTCAAAGACTCTAAGCTGCGGTCGTCACAAGTGTCAGGAAAGATGTCACATAGGACGATGTCCTCCCTGTTTGCAGAGCAGTTTCGATGAATTGTACTGTGAATGCGGCGCTGAAGTGATCTACCCGCCGGTACCGTGCGGCACAAGGAGACCTGTTTGCAATCGACCTTGTTCACGTCCACATTCTTGCGCTCATGAAGTGTTGCATAATTGTCACAGCGAACTTACTTGTCCACCTTGCACCGTGCTGACTCAGAGATGGTGCCACGGTAAACACGAACTCAGAAAAGCCGTACCATGTCACGTGACTGAGCTTTCATGCGGTCTGCCCTGCAACAAGCAGCTGTCATGCGGACGGCACAAATGCATCAGAATGTGCCACGCTGGATCGTGTGAAATATCTGGTCAACAATGCATGCAGCCTTGCGGCACAAAAAGAGAACTATGCGGGCATATCTGCGGCGCCCCGTGCCACGAAGGCAAGTGTCCGGAGTTACCATGTAAAGAAGTGGTCAAGGTTACGTGTCAGTGTGGACATAGGACTTCGAGTCGTGTCTGCAATGAGAATGCACAAGAATATATGAAGATAATGAGCGTTCTGGTGGCTAGCAAAATGAAGGACATGCAGCTTGGCCATTCGATCGATTTGGAAGAAGTTTACGGACAGAATGCAAAGAAGCAAAATCAGCTGAAGACTTTGGAGTGCAATGACGAGTGCAAAACGATCGAGAGAAACAGAAGACTCGCGTTGGGACTGCAGATCGTCAATCCAGATTTGAGCGGCAAATTGATGCCTCGATATACCGATTACTTGAAACAGTGGACTAAAAGAGATCCGTTCTTCTGTCAAATGGTTTATGATAAACTGACGGAATTGGTACAGTTAGCGAAAACTTCCAAGCAGAAATCCCGGAGTTATTCGTTCGAAATTATGAATCGGGAAAAACGCCATTTCGTTCACGAGTTGTGTCAGCATTTTGGCTGCGAAAGTCAAGCTTACGACGAGGAGCCGAAAAGAAATGTCGTTGCCACTGCCGTAAAAGATAAGTGTTGGTTACCGAGCTATAGCTTACTGGAAATAGTGCAGAGGGAAAAGGGGCAAAGAAAAGTTCCAGGGCCGGTACTGAACACTTCGATGGGAAATAGCTCTACAAAGACTGTTCTTTCGTTACCTACGAAACAAGGTCAACAATCGATGTCATTGTCATCAACAACTATAAAAACCCCCGACAAAGAAATCGATTATTTTGAATATCAAGGATAA
- Protein Sequence
- MATWDGSCPEDPNTLVYSNQNTSGNAANNWPQFANNIACLQNVPAESYYTRSGNRYSYQQECEQTGSTVAFWHSSNPMSLGHSHQEHILPNHAFVNDAQMSSNNFQHSISDIPSTSLHNVSSSSGDNYNKAKWMNNPMISKYVPATGSDSVLLNIVENSTLHPSANEFVPNNIKPRKEKFNKRNSPKRRTAATLMKCAYRKNEAISNQKETQVDNWRNRTEKDEMAQAHKKNPKKKYENDNHVSQRDRLTEQLNKGTLECLVCYETIRQTDYVWSCSNCYHVLHMKCIKKWARSSQSDNGWKCPACRDVSFQVPEDYFCFCGKMKMPQWNRRDVAHTCGGICGRKLTKNCNHKCILLCHPGSCPQCEAMVTKYCGCGRTSQMLLCSTQQLLLCDSICNKILSCGKHFCQKKCHHGECELCDKTVQQTCFCGKKTQEVLCRANVTDMYCCNNVCNKPLDCEKHYCQKVCHLESCEFCSLAPERVTVCCCGQTSLTEKRESCLDSVPTCNKICSKSLACGRPSNPHTCKMQCHTGDCPECDLSTEVKCRCGNMNREIPCRDLTSKADDARCAKRCKKKRSCGKHNCNQLCCIDIEHICPLPCSKTLSCGRHKCQERCHIGRCPPCLQSSFDELYCECGAEVIYPPVPCGTRRPVCNRPCSRPHSCAHEVLHNCHSELTCPPCTVLTQRWCHGKHELRKAVPCHVTELSCGLPCNKQLSCGRHKCIRMCHAGSCEISGQQCMQPCGTKRELCGHICGAPCHEGKCPELPCKEVVKVTCQCGHRTSSRVCNENAQEYMKIMSVLVASKMKDMQLGHSIDLEEVYGQNAKKQNQLKTLECNDECKTIERNRRLALGLQIVNPDLSGKLMPRYTDYLKQWTKRDPFFCQMVYDKLTELVQLAKTSKQKSRSYSFEIMNREKRHFVHELCQHFGCESQAYDEEPKRNVVATAVKDKCWLPSYSLLEIVQREKGQRKVPGPVLNTSMGNSSTKTVLSLPTKQGQQSMSLSSTTIKTPDKEIDYFEYQG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -