Pcoc008574.1
Basic Information
- Insect
- Pseudomyrmex concolor
- Gene Symbol
- -
- Assembly
- GCA_014839585.1
- Location
- QVOB01004105.1:13036-16134[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0037 0.42 11.6 0.3 3 23 448 470 447 470 0.94 2 10 0.00015 0.017 15.9 1.0 1 23 476 500 476 500 0.98 3 10 6.7e-05 0.0076 17.0 1.4 1 23 506 528 506 528 0.96 4 10 0.00015 0.017 15.9 0.1 3 23 536 558 534 558 0.93 5 10 5.6e-05 0.0063 17.3 1.7 1 23 565 589 565 589 0.97 6 10 6.2e-05 0.007 17.2 0.4 2 23 597 620 596 620 0.95 7 10 2.8e-05 0.0032 18.2 4.9 1 23 626 650 626 650 0.98 8 10 4.9e-06 0.00056 20.6 0.8 1 23 656 680 656 680 0.97 9 10 5.6e-05 0.0064 17.3 1.0 1 23 686 708 686 708 0.99 10 10 0.033 3.7 8.6 0.9 1 23 793 818 793 818 0.96
Sequence Information
- Coding Sequence
- ATGTTTTCGAAAAGAGTTGCTACTACCGCCAGAACATCAGATCATCCCACGAGCCCATTTGGTGGACTCTACGGATCCAAATGGCGAAATGTCTTACGTGGCAGCTCGTACAATCAGGGTTCCGTCTCATCCGAGACGGAGGAGGAGGATGAGAAGGACAGAAGAATCAGAAAAAATGAGAATTGGCATCAGACAAGTAGTGGCAAAAACTCTGACACCGAGACAATAGCTGATCTTGATAAATGGATCAAGACAAGCAGCACAGAGCCTTCAGTATCGTCAAATATAGATCTAGACACAACCAAAGTACTGGAAGGTATGGATCGTTATTTGGAAGAGGAGGATCTTGGACAAGGTTGTTTTTTCAACAAAGATCCGTATGGTCTGTCCATTGACATTGATTTGGCTGATACCAAGAAGCATGATCTGTCAACGGGATATGATTCTTTATTGCAGGATCTGTCGCAAAGCGAAAATCGACTTCTGGAACCGCCATGCGAAAAAGTTGTCGACGAATTTATCCTGCCGGAATTTCATTTGGATCATTTGGATCCGCTTACAGAACTTTCCTCAGACGACATGATAGTGGCTGGCGAGATTCTGCCGTCCACAAGCAGTCAGTCAGCGCTAAATGTGGGGAATATAGATATTGAGGAACAACATACTTTGAAAACAGAGATTCTAGAAGACAATTCCGAAAAAGCAACAACAAAGATAAATATTGGAAACGTGAACAAGATGGAAATTACCTCGCATCGACAGAAAATAATAGATCAGTCTTCGGCAAGTTCTTCAGAACTTTTTATCGAAGAAGCTTTAGAACCAGTCAAAGAAGAGTCATCAAATTTTATGACAAATTCCGTACAAGTAAACAGTCAAGATATTATAATAGAGCAATTAAAGTCCAAGGCTAGAATAAAATTTGAACCGCGTATCATTAAAAAGCATCGGCAAATGAAGGAAAAACTGGAGGAAAAGTTAGACAAGCCTATCAATGGTGGGAATATTGATGGCACGGATTCGCAGGACAATGTGATGACGGTGGTTGCCATATCGACCGACAAGATCTCCAACATGACGCAGATAGTCATCAACAATGGCACGCAGAAGAAGATAATTCAGAGCAAAACCTCGGAGTTAATTAAAGCAACCGGCAATTTTCCAAATCTACCTAAAATAGATACTTCTACAGCAGCTTGGAATGGCACCGTTGAACATGGCACTGATAATGTTCCGACTAATCAGTATGAAATTGTCATATCCAATACACTGGAGGAACTAGGCATCACGGACGATAGTTTGCAACCTGTACGTATCACCGAACGTGAGAAGGTGTGGCTTTGTCCCCGAGATGGTTGCAATAGACAGTTTAGCAGATTGTACACTTTGAAAGGACATTTGTTAGCTCACTACGGAGTTAGGCCGTTTAAGTGCGACTTCGAAGAATGCGGTTGGGCTTTTTATTCCGAATTCAAACTGAAAAGGCACAAGGAGACACATCTGAAACGCAAGGATCATGTGTGCGAGGTCTGCAACCGTCGCTTCACCACCGTCTACAATCTATGGAGCCACGAGAAGTTGCACAGTCGTCCGAATCGAATCGTTTGCCAGGTACCGGAATGCGGAGAGAAGTTTCAGACCAAGCGAGCATTGGAGCTGCACATGAAGTCGCATGATCAACGTCACGCGCCGTACGTGTGCCAGCACGAGGGTTGCGGCAAGCGTTACTACAGCAACAACGCGTTGACATCGCATCAGCGTTCTCACAGCTACAAGGAGGTGGACATCAAATGCTCGTGGCCGGGCTGCGGCAAGGTTTTCGACAAACCGTGTCGTCTAAAGGCCCACATACGCTCTCATACCGGATGCAAACCATATCGCTGCACGTTTCACGGCTGCAAGTGGGCGTTCTCGTCGTCCAGCAAGCTCAAACGTCATCAGAAAAAGCACACGAACGAGCGCAAGTTCGTATGCGACACGCCTGATTGCGGCAAAGCTTTCATGCGCTCGGAACATCTGAAGGAGCACAGACTTACGCATACGGAAGGTCGTTACTTTCAGTGTTTCGTGTGCGACGTCCGTTTTTCCGCCAAAAGCAGTTTGTATGTGCACATTAAAAAGCATCAGCAGATAGCCAAGGCGGACTTGAACATGATCGATAACAACACACCAACTGGATGTACCACCGGTGGTTTAAAACGCGCGAGAACGAGAGAGTCACACGGTTCGCAAGTGAAATCGAGTTCCAAGACGAAAGCAAAGTCCAAGAATGTGATAAACGTCGCGAAGAGCGCCGCGACGGAGCACATTGTCGAAAAGCTGAATGTGACCCACGATAACGCGCCCTTTATAAACCAAGATCAACTGAAGTGGTTTCATCGTTGTCCGTTAGAGATGTGCGGGCATTTGACAGGCAGCGAAACGAATCTGCGCGAGCACATGTTGAAAGCGCACGATATGTTGGACGACGATTCGTTGAACAACTCGCCGCCGAACGCGGGCATAGACTACATTCTGTACACAGTGCATTCTTCACGGCCGGGCTCACCCGCAGCCGTTAAAGAGGAGCAGATGGTCATGGTGTCCCCGTGCAACGCCGTGATCCTCGGCACTTCGTCGGATTGTTGTTTGCCCGAACCGGAACCGCCACCCTTCAACAGCTTAATGAAGAATGTAGACCCTCTTCGAGCCGAAAAACAAATTCACAAAGATACCGTACTGATTAAGAAGGACCAGAGATCGGCAAGGACAGATCTAACGTATTCGGACTGGTCCAAGTTGAAGAAAACAAAAGGTGCGGTGGTGGACTCGCTGATGGACTCGTCGGATGTTGTGTTAGGTGCGTCTAGTGACATGGGCGAGGGTCTGCTGCTCACGGAGGAACTGCCATCGATGTATTATCAAGACGACGCTGTGGGAACGGAGTACCAGGTGTTGTTGCTGGACTCAAATCCGCTTGAAAGTACCGGGTAA
- Protein Sequence
- MFSKRVATTARTSDHPTSPFGGLYGSKWRNVLRGSSYNQGSVSSETEEEDEKDRRIRKNENWHQTSSGKNSDTETIADLDKWIKTSSTEPSVSSNIDLDTTKVLEGMDRYLEEEDLGQGCFFNKDPYGLSIDIDLADTKKHDLSTGYDSLLQDLSQSENRLLEPPCEKVVDEFILPEFHLDHLDPLTELSSDDMIVAGEILPSTSSQSALNVGNIDIEEQHTLKTEILEDNSEKATTKINIGNVNKMEITSHRQKIIDQSSASSSELFIEEALEPVKEESSNFMTNSVQVNSQDIIIEQLKSKARIKFEPRIIKKHRQMKEKLEEKLDKPINGGNIDGTDSQDNVMTVVAISTDKISNMTQIVINNGTQKKIIQSKTSELIKATGNFPNLPKIDTSTAAWNGTVEHGTDNVPTNQYEIVISNTLEELGITDDSLQPVRITEREKVWLCPRDGCNRQFSRLYTLKGHLLAHYGVRPFKCDFEECGWAFYSEFKLKRHKETHLKRKDHVCEVCNRRFTTVYNLWSHEKLHSRPNRIVCQVPECGEKFQTKRALELHMKSHDQRHAPYVCQHEGCGKRYYSNNALTSHQRSHSYKEVDIKCSWPGCGKVFDKPCRLKAHIRSHTGCKPYRCTFHGCKWAFSSSSKLKRHQKKHTNERKFVCDTPDCGKAFMRSEHLKEHRLTHTEGRYFQCFVCDVRFSAKSSLYVHIKKHQQIAKADLNMIDNNTPTGCTTGGLKRARTRESHGSQVKSSSKTKAKSKNVINVAKSAATEHIVEKLNVTHDNAPFINQDQLKWFHRCPLEMCGHLTGSETNLREHMLKAHDMLDDDSLNNSPPNAGIDYILYTVHSSRPGSPAAVKEEQMVMVSPCNAVILGTSSDCCLPEPEPPPFNSLMKNVDPLRAEKQIHKDTVLIKKDQRSARTDLTYSDWSKLKKTKGAVVDSLMDSSDVVLGASSDMGEGLLLTEELPSMYYQDDAVGTEYQVLLLDSNPLESTG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01268473;
- 90% Identity
- iTF_01267757;
- 80% Identity
- -