Basic Information

Insect: Pseudomyrmex concolor
Gene Symbol: -
Assembly: GCA_014839585.1
Location: QVOB01022831.1:8258-11012[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.16 18 6.4 0.1 3 23 261 282 260 282 0.96

2 10 0.023 2.7 9.0 1.0 1 23 288 310 288 310 0.98

3 10 1.7e-07 1.9e-05 25.2 1.8 1 23 318 340 318 340 0.98

4 10 9.5e-05 0.011 16.6 6.3 1 21 346 366 346 368 0.95

5 10 1e-06 0.00012 22.8 1.0 1 23 377 399 377 399 0.98

6 10 4.1e-07 4.6e-05 24.0 0.7 1 23 405 427 405 427 0.98

7 10 3.8e-06 0.00043 21.0 0.4 1 19 433 451 433 455 0.93

8 10 2.6e-06 0.00029 21.5 2.0 1 23 461 483 461 483 0.98

9 10 1.5e-05 0.0017 19.1 1.2 1 23 489 511 489 511 0.98

10 10 1.9e-05 0.0022 18.7 5.1 1 23 517 540 517 540 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.16	18	6.4	0.1	3	23	261	282	260	282	0.96
2	10	0.023	2.7	9.0	1.0	1	23	288	310	288	310	0.98
3	10	1.7e-07	1.9e-05	25.2	1.8	1	23	318	340	318	340	0.98
4	10	9.5e-05	0.011	16.6	6.3	1	21	346	366	346	368	0.95
5	10	1e-06	0.00012	22.8	1.0	1	23	377	399	377	399	0.98
6	10	4.1e-07	4.6e-05	24.0	0.7	1	23	405	427	405	427	0.98
7	10	3.8e-06	0.00043	21.0	0.4	1	19	433	451	433	455	0.93
8	10	2.6e-06	0.00029	21.5	2.0	1	23	461	483	461	483	0.98
9	10	1.5e-05	0.0017	19.1	1.2	1	23	489	511	489	511	0.98
10	10	1.9e-05	0.0022	18.7	5.1	1	23	517	540	517	540	0.98

Sequence Information

Coding Sequence: ATGGCACAATCGGGTCTCTGCCGGCTGTGCGCGGAAGCCAAGAACAGCCTCATCGGTATTTACGACAATGAGGGCCAGAAGCTTATGATCGGGTTTAAGATAGCGAAGTGCCTGCAGATACAGGTTCTGATAACCGATGGCTTGCCGCTTACAGTTTGTGTAGATTGCTGCGACGTGTTGAACAAGTGCGACGAGTTCATCGAGAAGACCAATCAAGCGCAGATCTTGTTGAGGGAGTTGTTGGTAAATTCAAAGACCAAGTTGCAATCATCAGAACCAGATGTGGAATATGTGGCGGAGACCGTAGAGTTTCCGCAGCATGAAGTCACCGATCAGAAAGAGGAGATGACCGATCAGAAGGAATGCCAGCTGTCTGACAATTACATTAATGAGACAGTGAAAAAGTGTGAGGAAGAAACGAAAACTAAGGAAAAGTCTGTAGAAAAAAAAGATAAAGAGGAGAAGAGGAGTAAAGAAGAGTCTAAAGAGGAAAAGAGATCTAGAGAAGAGAAGAGGTCTAGAGAGGAGAAGAAGAAAAAATCAAAGGAGAACAAATCAAAGGAAAAGAAAATGCAAAAGATGGAAGAAACGTCCAAGAATCAAAGACATTCGTTGCGTCTAGATAAGAAACAAAACGATATAGCTGTGAAAAGTAATATCAACATTGTAGATACATCTGAATCAAATTTAGAAATACAAAAGTCGCAATCAGTAGAGAAAACACCAGTGGAAATCAAGCATTCAACAAAAGACAAGTGCTTGGAGAAATATTCGTGGCTGTGTACAGATTGTAATGAGACCTTACCGAGTTTGGTGGGACTAGTGGAACATCACGAAAAGGTGCACAACCAGCCACCTAAATATATGTGCGTACAGTGCAGTAAAGTTTACGACAAATATCAAGGGTTTGTCACGCATGTAAAAAGACACGGAAAACAGGGTAAGGAGAAGTACAGCTGTGATGAATGTGGGAAGACCTACACGCAACAAAAAAATTTGGTCGATCACATGTGTATTCACACGAGCGAACGACCGTATAAATGCAAAAGTTGCGACAAATCCTTCAAAAATTCAAGCTCTTTGTTTATTCACAAACGATGTCACTTACCTGACAATTTGAAATACCAGTATCAATGCGACCAATGTGATAAAAAATTTTCGACAAAGCCGAACCTGGTGACGCACAAACTCATTCACACTGGAGTCCGAAACTTCACGTGCGATCAATGTGGGAAAAGTTTTATGCAGAAGGGAAATTTGGAAGCTCATTTCTTGACTCACACGGAAGAGAAGCCATATAAATGCTCCATTTGTCCAAAGGCATTTAAGACGCCTATGCAATTGAAGAAGCACGATTTGGTGCACACTGATATCAAGCCCCATCAATGCGCCGTGTGCGGGAAGACTTTTAGAGAAAAGAGCACATTAAAGGAACACAGCAGAATTCACAGTAACGCAATGCCGTTCACCTGTGAATATTGCGGGAAAGCATTTCGTTTCAAAGGAGTATTGGTTACGCACAAGCGACAACACACTGGAGAGCGTCCGTACAGTTGTGCGGATTGCCAGCATCATTTCACAAATTGGCCGAATTATCAGAAGCATATGAGACGTCGGCATGGAATCAATATAGCATTCACTAGGTTTCTACCCAAGGATCAACTTCCGATTCAATTGCGACAGTCGATGAAACAAACGCAACCGCCTCAGATAAAAGAACAACCTTGCAATCAAGCTAATCCGCTTCCCATAGCCGCTGTAGCTCAACCGGAATCCGCGACACAAGTAATACAAACAGTTTCTCACGCTGCACCGCAACAGACAATCGCTCGAACTATTCCAACCACTACCGTTCAGAGTTTCCCAACGGACGTCACTAGTACTGTTCAAGAAACGGTATTCAGAGAACAAAATACAACGTATTTCACTACAGTATCAGTTACGCCGGATTTGTTGCCAACGAATTTGCCATATCACTTTTATACCATGTCAAATGTTACGGGAAATATTTAA
Protein Sequence: MAQSGLCRLCAEAKNSLIGIYDNEGQKLMIGFKIAKCLQIQVLITDGLPLTVCVDCCDVLNKCDEFIEKTNQAQILLRELLVNSKTKLQSSEPDVEYVAETVEFPQHEVTDQKEEMTDQKECQLSDNYINETVKKCEEETKTKEKSVEKKDKEEKRSKEESKEEKRSREEKRSREEKKKKSKENKSKEKKMQKMEETSKNQRHSLRLDKKQNDIAVKSNINIVDTSESNLEIQKSQSVEKTPVEIKHSTKDKCLEKYSWLCTDCNETLPSLVGLVEHHEKVHNQPPKYMCVQCSKVYDKYQGFVTHVKRHGKQGKEKYSCDECGKTYTQQKNLVDHMCIHTSERPYKCKSCDKSFKNSSSLFIHKRCHLPDNLKYQYQCDQCDKKFSTKPNLVTHKLIHTGVRNFTCDQCGKSFMQKGNLEAHFLTHTEEKPYKCSICPKAFKTPMQLKKHDLVHTDIKPHQCAVCGKTFREKSTLKEHSRIHSNAMPFTCEYCGKAFRFKGVLVTHKRQHTGERPYSCADCQHHFTNWPNYQKHMRRRHGINIAFTRFLPKDQLPIQLRQSMKQTQPPQIKEQPCNQANPLPIAAVAQPESATQVIQTVSHAAPQQTIARTIPTTTVQSFPTDVTSTVQETVFREQNTTYFTTVSVTPDLLPTNLPYHFYTMSNVTGNI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01269225;
90% Identity: iTF_01269225;
80% Identity: -