Pcoc012657.1
Basic Information
- Insect
- Pseudomyrmex concolor
- Gene Symbol
- -
- Assembly
- GCA_014839585.1
- Location
- QVOB01009825.1:11884-16497[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.45 51 5.0 2.5 1 23 411 433 411 433 0.96 2 18 0.015 1.7 9.7 0.5 2 23 466 487 465 487 0.96 3 18 0.0019 0.21 12.5 0.4 1 23 559 582 559 582 0.94 4 18 0.00089 0.1 13.5 0.9 1 23 585 607 585 607 0.97 5 18 0.0075 0.85 10.6 0.2 2 23 654 676 653 676 0.96 6 18 0.00028 0.031 15.1 0.9 1 23 682 704 682 704 0.97 7 18 0.00014 0.016 16.1 0.9 1 21 712 732 712 736 0.92 8 18 0.00013 0.015 16.1 0.7 2 23 810 832 809 832 0.94 9 18 0.00012 0.014 16.2 5.1 1 23 887 909 887 909 0.97 10 18 0.00015 0.017 15.9 0.7 1 20 914 933 914 935 0.94 11 18 0.0015 0.16 12.8 0.5 2 23 946 967 946 967 0.96 12 18 2.6e-05 0.003 18.3 0.6 2 23 1006 1027 1005 1027 0.97 13 18 2.4e-05 0.0027 18.5 1.6 1 23 1032 1054 1032 1054 0.95 14 18 2.7e-05 0.0031 18.3 1.9 1 23 1060 1082 1060 1082 0.98 15 18 4.2e-06 0.00048 20.8 0.4 1 23 1098 1120 1098 1120 0.95 16 18 3.4e-07 3.9e-05 24.2 0.6 1 23 1126 1148 1126 1148 0.99 17 18 3.7e-05 0.0042 17.8 0.2 1 23 1154 1176 1154 1176 0.97 18 18 0.022 2.5 9.1 6.9 1 23 1182 1204 1182 1204 0.96
Sequence Information
- Coding Sequence
- ATGGACGCCGTGGAAGTAAATACATCAAATCCACCGCGGGCAAAGGACGCGTCTCCGATGAAGCTGTGTCGCGTGTGTCTGATCGACAATCTGATGACGCGCGATCTCTTTTTCGAGGGCGACGTCGCGTCTCTGTCGACGAAGGCGATGAGTTTTGCCAACGTTAAGATATTACCAGGTGACGGTCTCCCAGCACAGGTTTGTTGTGTGTGTGCAGAAAAGTTGGAATCTGCATACGAGTTTAAGTTACAAGTGGAACAAGCCGACAGTGTTCTTAGGGAGAAATTGATAGGAGGTCTAATGAAAGAGGAATTATTCCTCAATGAAGTTGAGATACACTTGGATCCTGAAAGATCGGATGATTTAGAAGAGATAAGTACCGGTGCCGATTACGAGCACGCTACCACAGTTCTGATAGAAGAAGAATCGGACGCAGATCGGAATTTTATAAAAGACGATTTAATTATTTTGGAAACCGAAAAATTATCGGAGGAACTGTCACAAGACGCAGCGGAACAAGATGATTCGCAAAAGATCATGCAGGAAGTTAATCGACGTACGGAAGAGTTGCAGCAAGAATTAACTGACATAGAGGCTAGTAATATATCAAATAATATCAAGGAATCGTTGAATCAAAATCCTTCTGTGATTGAAAACACCACTTCAGACTGTGCAGATATGATACCAGCAGAAGAACATGATTATGTACAACAGTGTGTGTTATCCACTGAACAACTTCCTCTTGTGCAAGATAAAGCAGAGATGAATGAGTCAGAAGATGAGAAGTACAAAGTGGACTGTCAAGAAATGTCGTTTGAGCAGAATCAAGAAGAAAATCAGATTCAGCCTGAGGAGAATCAAGAAATTCAAGACGTTCAAAACGATCATCATCAAATCGAGCACAATGAAAATAGCGAAGTCATGTCGTTCATAGAGGAATCTCTAGCGGAGGCAATTTCCACAGAAGAATCTCATAAGGAAGAATCTTCGAAATCTTTCAAAGAAGAATGCTCTAAGATGGAATCCTTGACAGGAGAGATGGCACAGACCGACAATAATGAATCAGCCGTGCAAGATTCACCTCAGAATGAAACCAGAAGGAGTAAGCGCAGGTTGGCTCGCCGAACGTTTGCCGAACGGGACTCGGATGAGGAGAACTACTTCGAAAACCTGAATCTTAGTTCCCGACTCAAAAGAGCTAAAACAACAGACAAGGCGGAGAAGATCGTCTTCATGTGTTACTTGTGCGACAAAGAGTTTTTGTCCAAAAATATTTTGAAGGAACACATGCATTCTCATGAGGAAGTGAGAAAAACCTTGTCGCTGAAGACGCCGGAGAAGATGCAACCCAATGTCTCTCCCGCAAAGACGCCAGCATCCGGAAAGAAAGCCAACAAGTGTCCTTATTGCGGTAAAGAATATCTTTACATAATCTCGTTTACCAAGCACATTAAGCAGCACGAACGAGAACAGGAAGAGACTAAGGACGACTCGATGCCGCTTGAGGTTCACGAGGACGAGAATAGTTGTGACTTCGATAACGCCAACAATTCATCGGACAGGGAATGCAGAAAACGACCGAGAAGAGGAAACACGGACGACGGATACAATGACGACACAACGACGAGCGAGGACGATCAGGAAAAGAGAAGAAAGCGAAGCCGCGTTGAGGAATTTACGTGCGACAAATGTCCGGAAAAATTCAGTGCGAAGCAAGAATTGGACAAACACGTGCTCGAGACGCACGTTAGCTACAAGTGCAACGAGTGCAAGGAGGAATACGATACTCTGAAGGAGCTACGAGATCATCGAGGCAAGCATGTGATAGAGGGTGTGCTCACTGAACAGGATTTAGAGGAAGATATGAAACAAATGACGACCAATAGCGACGAGGACAACGCGGACGAGGAGATCGAGGATCAGAAAAATGACGAAACTGTGAAAAGCACAAAAGAACTGAAGTGTCCCAAATGTCCAATGTTATTCGCGCGCAAGAAAATACTGGCCAGACATTTGGAGACGTCGCATTCCGTAACCGGCAAGTACGAGTGCAAGCTGTGCATGCAAAAGTTTTCGCGAAAGGATCTTCTTCGCTGGCACATCGAACAGCATGCGCGATCAGCACGCGGGACCTTCAAATGTACTCAGTGTAACAAGATGTTCAGCAACGAGCTCACTCTGAGGAACCACCTGATCGCCACGAGTCACAAAACGTTCCTGCACGGTCAAGAATACGACACGAACAAGCGTATAAAACGCGTGGCCGCGAAAGCGGCTCAAAAGATCATCGACAAGATCAAGACGGAGGACGGCTTGGAGGATTACGACTCTAATAACGATAATACCGAGTACGATGCCAAGCTGGAGAGACATTATCATCGTAAAAGCGACGCGTCGCCGAAGAAATACAATTATAAAAAGGATTTGGAGTGCGCGACGTGTAACAAGAGGTACAGTTCGAAGCAGGCTCTGATGAAGCACATGGAACAACAGCACGTGAAAAACGAGAAGGCGACGGAACAAGCAACGGAAAAAGCAGCTGACAAGTCGAAAAAGGCCACGCCGGAGAAGAAAGAGACGCAGAATTTGACGAGCGATAACGGCGACGACGACAACGATTCCGACTTCGAGAGCGGTTTGGAGTGGCCGATGGACAGTCACGAGTGCACCACGTGCAAGAAACGTTACAGCACGAAAAAGTCGTTGATGCGACACCAATTGCTACACGAAGAACCGAACTTTGAATGCGACATCTGCAATATCAAGTTCTATCGCAAAGACAAACTGAAGGCGCACTACGACAAGTGCTCGGAAAAGAATCCCGATCAGGTGAGGAAGTGCAATATCTGCGGCGACAGCTTCGAAAACAACGAGTTGCTGCGTGAGCATAGAACGAATCACGTGACCGAGGGTATCTTGACGGAAGAGGATTTGAGAGACATCGAGCCGAAACCCGAGGAGAAGAAACCGGGCGAAAAGGTCGGCCGTAAGAGGAGGACCGATATTGTCGGTCTCGAATGTACCGAATGCAATAAGCAATACACCTCCAGAAAGGGTTTACTGCGGCATATCCAAGTGCACGAGGGCAAGAAGTACTTGTGCGACATATGCCCGAAGAAGTTTTACCGGCGAGAACATCTGAAGATCCATGTGGCCAAGCACAACATGGTCAAGCCGTACAAGTGTCCACGCTGCACCAAGCGCTTTATCAAGGAAGACCAACTCAACACTCATCTGTCGAAGCACGATCGCACTTTCAAGAAGAACAAAGAACCCGACAGTACCAAGAGATTCCTCTGCGAGATCTGCAGCAAGAGCTTCACGCAATCGACAACGCTGATTGCGCATTTGCGCGCCCACAAGGGCATCAAACCGTACGTGTGCGAAGTGTGTTCCAGACCGTTCACCACCAATGCTTATCTGAAAATGCACATGCGCACGCACACGCAGGAACGGCCGTACATATGCCAATATTGTTCGCGAGCTTTCGCACGAGCAGACACCTTGGCGAATCACCTGACCTCGCACACCGGCGAGGCCAAGTATCACTGCAAGTGTTGCCCGAAGAACTTCCGGCGACTGAAGTCGCTGAAGGAACACATGTTCATTCACACGGGCCAGCGACCTTATGAATGTCCGACATTGCACCAAACTACGATCGGTCAGGCGCAACTGGTAAAGGCGCAGAACATCAAGACGATTGCGATAACGAGAACGGCCGATACCGGTACGACGCAACAGGTGATGCAACATCAGGAGATATTGATGCCTCTGATTTTGCCACTCACCGTCACACTCGCCGACGTCGGTGAAGAAGTGATATTACCCGAAGGTACAAAGATCTTCACCACTTCCTAA
- Protein Sequence
- MDAVEVNTSNPPRAKDASPMKLCRVCLIDNLMTRDLFFEGDVASLSTKAMSFANVKILPGDGLPAQVCCVCAEKLESAYEFKLQVEQADSVLREKLIGGLMKEELFLNEVEIHLDPERSDDLEEISTGADYEHATTVLIEEESDADRNFIKDDLIILETEKLSEELSQDAAEQDDSQKIMQEVNRRTEELQQELTDIEASNISNNIKESLNQNPSVIENTTSDCADMIPAEEHDYVQQCVLSTEQLPLVQDKAEMNESEDEKYKVDCQEMSFEQNQEENQIQPEENQEIQDVQNDHHQIEHNENSEVMSFIEESLAEAISTEESHKEESSKSFKEECSKMESLTGEMAQTDNNESAVQDSPQNETRRSKRRLARRTFAERDSDEENYFENLNLSSRLKRAKTTDKAEKIVFMCYLCDKEFLSKNILKEHMHSHEEVRKTLSLKTPEKMQPNVSPAKTPASGKKANKCPYCGKEYLYIISFTKHIKQHEREQEETKDDSMPLEVHEDENSCDFDNANNSSDRECRKRPRRGNTDDGYNDDTTTSEDDQEKRRKRSRVEEFTCDKCPEKFSAKQELDKHVLETHVSYKCNECKEEYDTLKELRDHRGKHVIEGVLTEQDLEEDMKQMTTNSDEDNADEEIEDQKNDETVKSTKELKCPKCPMLFARKKILARHLETSHSVTGKYECKLCMQKFSRKDLLRWHIEQHARSARGTFKCTQCNKMFSNELTLRNHLIATSHKTFLHGQEYDTNKRIKRVAAKAAQKIIDKIKTEDGLEDYDSNNDNTEYDAKLERHYHRKSDASPKKYNYKKDLECATCNKRYSSKQALMKHMEQQHVKNEKATEQATEKAADKSKKATPEKKETQNLTSDNGDDDNDSDFESGLEWPMDSHECTTCKKRYSTKKSLMRHQLLHEEPNFECDICNIKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNELLREHRTNHVTEGILTEEDLRDIEPKPEEKKPGEKVGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMVKPYKCPRCTKRFIKEDQLNTHLSKHDRTFKKNKEPDSTKRFLCEICSKSFTQSTTLIAHLRAHKGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKCCPKNFRRLKSLKEHMFIHTGQRPYECPTLHQTTIGQAQLVKAQNIKTIAITRTADTGTTQQVMQHQEILMPLILPLTVTLADVGEEVILPEGTKIFTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01268439;
- 90% Identity
- -
- 80% Identity
- -