Pcoc020237.1
Basic Information
- Insect
- Pseudomyrmex concolor
- Gene Symbol
- lola
- Assembly
- GCA_014839585.1
- Location
- QVOB01014792.1:39756-43314[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.6 9.8e+03 -3.2 0.1 4 20 102 118 101 119 0.73 2 2 2.4e-09 5.1e-06 26.5 0.0 9 40 398 430 397 435 0.89
Sequence Information
- Coding Sequence
- ATGGAGGACGATCAGCAGTTCTGTCTCAGGTGGAACAACCACCAAAGCACACTAATACAAAACTTTGACACACTACTCGAAAGTGGAACACTGGTCGACTGCACGTTGGCAGCGGAAGGGAAAACCCTCAAGGCCCACAAAGTAGTCCTTTCTGCGTGCAGTCCATATTTTGAGTGCCTCCTCAGCGAACACTACGATAAGCACCCAGTCTTCATACTCAAGGATGTTAAGTTTAAAGAACTAAAGGCAATGATGGATTATATGTATAGGGGGGAAGTAAATATTTCTCAAGACCAATTGGCAGCACTCCTCAAAGCCGCTGAATCTTTGCAAATAAAGGGCCTTTCGGAAAGTAAAACAACCGGCAGTAGTAAGACGGAATCCAGGCCACAAAAACCCGTCTCACAACCTACAGCCCCGTCGTTAGACATTCCACACTCGTCTTCCGGTCTGACGATAGAAAAGAACAAAGTTCCTAGGCAAAGTATGACGTCAAGTTCCGTGGGAGATATACCTGAAGATACGGCTAGTCCACAGGCAAAAGGGCTCTCCTCCAAGAGGGAAGGTTCACAAAGTCCGACCCCACGAAAAAGAAAGAGAATTCGAAGAAGAAGCTCGGGCGAAGAAAATACGATAGAAAATCAAGACGCCTCCAGTTCTAGTGATATGCCTCAGCAAATGAGCGTTCCGGCACTTGGAATCGCACCAGTGGCAGACGAAAAAGTTCATTCAAATCCATCTGATTCTCTCGGCAGGTCAACTTTGATGACGCAACTGACGAAACCTGCTGATGAGATGTTACAGCTGCCCCTTGAAAAACCCGAGCCAAACGATAATTTCATCGAGCCAAAGTCTGAATTTGTAGAGGAGACGGAGGAGGGTGTTGAGGATTTGACGTTAGACGATGATATGAACGATCTTAATGACATGGAACAAGACAACAACAGAGCCGGACCGTCCCATGACTCTACCCAACATTCTGGTGGGGGGGCGGGAGCGCGGTCTCGGTCGAGAGGGAATATCGGTAATGACGGTGGCCGTGATGGTGCCTTATGGGCTTCCCATTTCCTCGCATGTAAAAAAGTGCCAATGAGGCGGCCGACACTCCCAGACGTTGACGTAGGCGCGTTGCTTAAATCACTGGCGAACAAGCAGGGCAGAAAGTATAGCTTAGACTTGGTTAAAATGTCTCTGGAGGCGATATTGGAACAGGGGGTTAGCACCACTCAGGCATCCGAGATGTACGGCATTAATCGCTCGACGCTCCAGTTCTATTTGAAAAAGTTGAACGTCGTCAGGAGAAGATGGAGACAGCCACCGGGCACCGTCCCTGTACAGCAAAGACATACGTAG
- Protein Sequence
- MEDDQQFCLRWNNHQSTLIQNFDTLLESGTLVDCTLAAEGKTLKAHKVVLSACSPYFECLLSEHYDKHPVFILKDVKFKELKAMMDYMYRGEVNISQDQLAALLKAAESLQIKGLSESKTTGSSKTESRPQKPVSQPTAPSLDIPHSSSGLTIEKNKVPRQSMTSSSVGDIPEDTASPQAKGLSSKREGSQSPTPRKRKRIRRRSSGEENTIENQDASSSSDMPQQMSVPALGIAPVADEKVHSNPSDSLGRSTLMTQLTKPADEMLQLPLEKPEPNDNFIEPKSEFVEETEEGVEDLTLDDDMNDLNDMEQDNNRAGPSHDSTQHSGGGAGARSRSRGNIGNDGGRDGALWASHFLACKKVPMRRPTLPDVDVGALLKSLANKQGRKYSLDLVKMSLEAILEQGVSTTQASEMYGINRSTLQFYLKKLNVVRRRWRQPPGTVPVQQRHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01354704;
- 90% Identity
- iTF_01266954;
- 80% Identity
- iTF_01266954;