Pcoc006471.1
Basic Information
- Insect
- Pseudomyrmex concolor
- Gene Symbol
- run_1
- Assembly
- GCA_014839585.1
- Location
- QVOB01017384.1:162-3412[-]
Transcription Factor Domain
- TF Family
- Runt
- Domain
- Runt domain
- PFAM
- PF00853
- TF Group
- Beta-Scaffold Factors
- Description
- The AML1 gene is rearranged by the t(8;21) translocation in acute myeloid leukemia [1]. The gene is highly similar to the Drosophila melanogaster segmentation gene runt and to the mouse transcription factor PEBP2 alpha subunit gene [1]. The region of shared similarity, known as the Runt domain, is responsible for DNA-binding and protein-protein interaction.In addition to the highly-conserved Runt domain, the AML-1 gene product carries a putative ATP-binding site (GRSGRGKS), and has a C-terminal region rich in proline and serine residues. The protein (known as acute myeloid leukemia 1 protein, oncogene AML-1, core-binding factor (CBF), alpha-B subunit, etc.) binds to the core site, 5'-pygpyggt-3', of a number of enhancers and promoters.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-30 7.4e-27 93.9 0.0 3 70 19 86 17 88 0.96 2 2 2e-15 1.2e-11 44.7 0.1 94 129 87 122 86 122 0.97
Sequence Information
- Coding Sequence
- ATGCATCTGCCGGACGGTTTGGCGGAAATGGACCTCTATTACAGGCGTTTTTTCGAAACCGCCAGAACTTATCACGGAGATATAGTATCAACGGGTTGTCCTTTCATTCTATGCAGCAAATTACCGAATCATTGGAGATCGAACAAGTCTCTTCCAACAGCGTTCAAGGTCATAGTACTCTCCGAAGTCAGCGATGGTACTCAGGTTACTATCAGAGCTGGCAATGACGAAAATTATTGCGGCGAGCTTAGAAACTGGAAATCATTTTCACTGACAATTCAAATCGACAGTATGCCGGTCCAAGTAACTACATACGGCAAAGCAATCAAAGTTACTGTAGACGGACCACGCGAACCGAGATCTAAATCGAATTATCATTACGGTCCAGGTTTTCCGGGAGTATATAGTCCATGGTTGGAAGGCACGTCGTTCCTAAATTGGTCGCATTATGCTGCTTTGCTTAAAGGAACGATGCCGATACCAGGAACGATACCGCCGCCGCCGCCGCCCCCTCCTGTGGAACTGTTCAATTCGAATTTCTTGCCGTACATGTTCGACAGATACTACGAATGCACAGGATTAACAACGACGAATACGACGGCGGCCGTGATGACCCCGGTAACCGCGGTGGCACCCCTTTCAGCGATCAGTCCGTCTAGGACACCGAACAGTCACAGTGATTCCAGTAGCAATCACAGTGAGTCGGCAGTCGATGAAATACGAAGCGCTTTTGTACCTCTTCGGCTCCACAACTTGCCACCCAGTACACTCTCGTCTTCGTCGTCGCCGCCCGAAAAGAATCCGAGGAAACCGACCGAGGGTGTGAGAAACGAATTGAAAGCCCCGACCGCACTCATCTGCAACAGACAGTCACCGACTGTCAAAAGGAGTCCGACACCGACCAAGATATCGTCGTCGCAGTCGATGAAACCGGTCTGGAGGCCGTACTAA
- Protein Sequence
- MHLPDGLAEMDLYYRRFFETARTYHGDIVSTGCPFILCSKLPNHWRSNKSLPTAFKVIVLSEVSDGTQVTIRAGNDENYCGELRNWKSFSLTIQIDSMPVQVTTYGKAIKVTVDGPREPRSKSNYHYGPGFPGVYSPWLEGTSFLNWSHYAALLKGTMPIPGTIPPPPPPPPVELFNSNFLPYMFDRYYECTGLTTTNTTAAVMTPVTAVAPLSAISPSRTPNSHSDSSSNHSESAVDEIRSAFVPLRLHNLPPSTLSSSSSPPEKNPRKPTEGVRNELKAPTALICNRQSPTVKRSPTPTKISSSQSMKPVWRPY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01270288; iTF_01269577; iTF_01270974; iTF_01267328; iTF_01268049; iTF_01268794;
- 90% Identity
- iTF_01270974;
- 80% Identity
- -