Basic Information

Insect: Pseudolycoriella hygida
Gene Symbol: -
Assembly: GCA_029228625.1
Location: CM055405.1:44107973-44113911[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.022 2.7 10.2 0.9 1 23 53 75 53 75 0.96

2 16 0.00036 0.044 15.8 4.6 1 23 117 139 117 139 0.98

3 16 0.43 52 6.2 0.3 1 20 181 200 181 201 0.96

4 16 0.023 2.8 10.1 1.2 2 23 257 279 256 279 0.95

5 16 0.17 21 7.4 1.6 1 14 393 406 393 411 0.88

6 16 0.074 9.1 8.5 0.7 2 21 421 440 420 441 0.93

7 16 1.6 2e+02 4.3 1.6 1 20 453 472 453 474 0.90

8 16 0.27 33 6.8 1.8 3 23 534 554 532 554 0.97

9 16 0.017 2.1 10.6 2.9 2 23 755 776 754 776 0.97

10 16 0.0083 1 11.5 3.5 2 23 900 921 899 921 0.97

11 16 0.0027 0.34 13.1 2.1 1 23 963 985 963 985 0.96

12 16 4.2e-05 0.0052 18.8 0.1 2 23 992 1014 991 1014 0.95

13 16 3.2e-05 0.004 19.1 3.2 1 23 1020 1042 1020 1042 0.96

14 16 0.031 3.8 9.7 0.8 1 19 1048 1066 1048 1070 0.93

15 16 1.9e-06 0.00023 23.0 1.3 1 23 1076 1098 1076 1098 0.99

16 16 0.018 2.3 10.4 1.6 1 23 1105 1128 1105 1128 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.022	2.7	10.2	0.9	1	23	53	75	53	75	0.96
2	16	0.00036	0.044	15.8	4.6	1	23	117	139	117	139	0.98
3	16	0.43	52	6.2	0.3	1	20	181	200	181	201	0.96
4	16	0.023	2.8	10.1	1.2	2	23	257	279	256	279	0.95
5	16	0.17	21	7.4	1.6	1	14	393	406	393	411	0.88
6	16	0.074	9.1	8.5	0.7	2	21	421	440	420	441	0.93
7	16	1.6	2e+02	4.3	1.6	1	20	453	472	453	474	0.90
8	16	0.27	33	6.8	1.8	3	23	534	554	532	554	0.97
9	16	0.017	2.1	10.6	2.9	2	23	755	776	754	776	0.97
10	16	0.0083	1	11.5	3.5	2	23	900	921	899	921	0.97
11	16	0.0027	0.34	13.1	2.1	1	23	963	985	963	985	0.96
12	16	4.2e-05	0.0052	18.8	0.1	2	23	992	1014	991	1014	0.95
13	16	3.2e-05	0.004	19.1	3.2	1	23	1020	1042	1020	1042	0.96
14	16	0.031	3.8	9.7	0.8	1	19	1048	1066	1048	1070	0.93
15	16	1.9e-06	0.00023	23.0	1.3	1	23	1076	1098	1076	1098	0.99
16	16	0.018	2.3	10.4	1.6	1	23	1105	1128	1105	1128	0.96

Sequence Information

Coding Sequence: ATGACCGACTTTCAATTTGTAAACACTGACAACTTCGACCAGGGATCTCTGAAACCATTGAgcgaaaatcgttatttttgtgCTATTTGTGATAGAAAACTCAACGATGTCCGGTTGACGGATGACGAACTCGAACGCTTCAAGACCAACAACGGATTCAATTGcaacatttgtttcaaattgtACCGCAGCATTAACTCGTTAAAGGATCACCAAATCGAACATTTCAACGGGAATGAGTTAAAAGTTGCTTGCGTTGAATGTACGAACTTATCGAAAACATTGGACGCTGCATGTGAAATAGTGGAAATCGGTGAAATTTACACTAAAAATGATGTTCGTTCTGAATACTATTGCGAGACATGCGATCGCTGTTTCGATGATAAGAACAAGTACAAACAACATATTCGAGATCATTATGATCGCATTGTGTACACCTGTGACGATTGCAATGGTACCAAAATTATCGGATGGGAGAGGTGGAACATCCACAGAACCACCACGCACGAGAACACGGAGCTGACTCCAAGCAATCTTTCATACAAATGTAGTGTTTGTGCAATAGTAATCTGTAACATATCCGAATTCCAAAAACATTTGTCGTGTTGCCAATCGACGAACATTGGGCAACCTGTTAATCTAAATGACGGCGATTCCGTTTATTGTGGCATTTGTTGTGTGGAAATGCCAGACATTAAGGCTGTCGAACAGAAACTGAGGACGCAAACGACGGAGACCGACTATTTCCGAACGAGTTTCGATGCTTTAAATTGTTTGATGTGCCACAAAGTATTTTTGTCGAATGGAGACTTGTTGGATCATCAGAAGAAAGATCATTTCGAGAGTCGATATGAAAATCGCTTCGCTTGTGTTCGATGCATCAACAAAGCGAATAAATTTGCTTGCGCTGCTAGTGATGCGGCTATTACAAACGCAACCAGTTTCGCGTCAAAagacaaaacattttgttcaatgtgcGGTAAATTTATAAAGGTTACGCTTTGGCCACGACACGTACGCAACCATCGAGACAGAGTGGTTTATCAGTGTGGCAGTTGCCGCAAAATACGAATTGGTGCCATCCGATTCCAGAATCACTTCAGACAAAGTCCGAAATGCGtcaatttcatcgattttcacAATGACAAAGTGGAAAAAGAATCGAAAAGCTACACGTACCAATGCGTCAAATGTAAGCAAACGTTCACGCGGCGATCGTTTAAAGGTCACGTCGAAGAAAGTGATTGCTACAAAGAGAATCAATGCAAAACTTGTGCGAAACGCTTCATTACGAAGATTGCGTTGAACGGACACCATCAAAATAGAGATTGTGTGAAAGTCGAATCTTCGTCGAAATTCCAATGCATCAAATGTGATAAGTTTTTCCACACACGAAAAGGTTTCGCTTTACATTCGAACGTCTGTCGAAGGTGGAATGAAAGAACCAACCGTTGTGACATCTGCAATATTTTGATAGATTCTTCAGTGGATCATTGGAATGACTTTCATCGTCGCAAATCACTGGTTCAGATGAAACGGAACGTTGATAAAGAAATGAATTCTTTATCCAAAAGCCGTTGCAAAGAAATACAATTCGGTTGTTTGCTATGCGAATCGACATTTAGCAGCCGACAAAAGTtacaatttcatatgaaaactcATTACTGTGATAAAGCGGTGCAGACAATGTCTGAGGGTCATAGTGAGGTCGATTGGGACTTAGTTGATACAGACTCAAAGCATCCTGAAATACCGCACTTGAAAGACGAGAAAATTGATACGCCACCGATGGCTGAAGGTACTAACGTAGAGGATGAAAATAGCTTCCTCTTTCCCAATGCAATTGCAGAGCCCATAAAAACAGAGTTTACTGATGACATTGAGGAGACGTGGGCTgcaaattctgaaaattttacAAGTTTCGCAGACGATGACACCGGAGATGTTAGCGATGAAGAAGCTACTCACACCAATACGATGTCAACTAATGCACAGGGAATGGATACGTGTTGCTTTTGTAAAAATGTCATTCACGACTTGATAAGCGCAGACGACGTGGTCCATCAACAAATCAACACATTCGGCCAATGCTTTTGCATGGTCTGCTTCCAAttgttttcgaaattcgaaaaattacgCGAACATGAAATCTCTCATCGAAGAGACAATTCAGACGGACATTTGATTGCGTGCAGGCTGTGCGCATGGTCTTCCAATGTCTACTTCACAGATGCGGATTTTTTCCGTTTAGAAAAGGACCTTCAGTGCTACATGTGCTCAACGAAAACGTCTGACCTACGAACTTTGCGAAGACACAAACGGTCCCACCTCAGCCTGTGCGTATTCACGTGCAAAGTGTGCAACAAAAGGAGCATTTCCGACGAAAGACATCGAAGTCATTTACGGAAGCATCAGAAGACCGAATTTAGCGCTGTGACAAATCAAATCGTCCGGAAGTGCACGATGTGTAGCGAAGAAGCGACAAACTTATTCCGTGATGAGGAGGAAATCGACGAAATGTTTGAGAAATTTGGAGGTGGCCCGTGTAAGATTTGCTTCACGTACATCAATGACAAGCGTCGCTATGTGTCACACGAAAGAGGTCACATGGATGAGCAGCAATTGATTGCCTGCCTCAAATGTTGCAATTCCAAGGTGTACACGGACGATGAATATCACCAATTCGAAGATGAACTCAAGTGTTTCATTTGTGATGCCAAACTGTCGTCCAAGTACAATCTTCATCTGCACAAGCGGAAACACTTGGACCGAGTAGTTTACACTTGTACCATTTGTTCGGCACTTGTTGTCGGCACCAAAAACCACAGCCATCATATGTACAAACACGGTTTACGTAAAAAGAATCGAAATGAAGAGAAAGGTCGTTTTGAGTGTGACTTTTGCCAGAAAGTGTTCCCGCATAAAAGTTCACTGCCGGCTCATTTCAAGCAGCATTTGAACAAAGAACGTGTTCCTTGTCCTCAGTGTACATTAACATTTGCAAGCAAGGGAAATTTAACGCAGCACATCAAACAAATTCATCTCAATATTCGCAAGCACATTTGTGAGTTGTGTGGTAAGGCGTTTGGTCATCCTCACAATTTGAAGAGTCACATGGTTAAGCATTCAGGAGAAAAGCCTTACCAATGCCCAATTTGCTTCAAGCGATTCGGATACTACAGTCGCATGAAAACGCACGCGTGGATTCACAGTGGCCTAAAACCGTACAAATGCGATCAATGCGACAAGGCGTACAACGATTCAACTGACCTGCGACGACACAAGAGAATTCACGGTGGTGTGGAGAAGAAgttcgaatgcgaattatgtaaaatcaaattttacgaACACAAATACTTGCGAGCCCACCGCGCGTCGGCTCATAAATTTTTGGttcaataa
Protein Sequence: MTDFQFVNTDNFDQGSLKPLSENRYFCAICDRKLNDVRLTDDELERFKTNNGFNCNICFKLYRSINSLKDHQIEHFNGNELKVACVECTNLSKTLDAACEIVEIGEIYTKNDVRSEYYCETCDRCFDDKNKYKQHIRDHYDRIVYTCDDCNGTKIIGWERWNIHRTTTHENTELTPSNLSYKCSVCAIVICNISEFQKHLSCCQSTNIGQPVNLNDGDSVYCGICCVEMPDIKAVEQKLRTQTTETDYFRTSFDALNCLMCHKVFLSNGDLLDHQKKDHFESRYENRFACVRCINKANKFACAASDAAITNATSFASKDKTFCSMCGKFIKVTLWPRHVRNHRDRVVYQCGSCRKIRIGAIRFQNHFRQSPKCVNFIDFHNDKVEKESKSYTYQCVKCKQTFTRRSFKGHVEESDCYKENQCKTCAKRFITKIALNGHHQNRDCVKVESSSKFQCIKCDKFFHTRKGFALHSNVCRRWNERTNRCDICNILIDSSVDHWNDFHRRKSLVQMKRNVDKEMNSLSKSRCKEIQFGCLLCESTFSSRQKLQFHMKTHYCDKAVQTMSEGHSEVDWDLVDTDSKHPEIPHLKDEKIDTPPMAEGTNVEDENSFLFPNAIAEPIKTEFTDDIEETWAANSENFTSFADDDTGDVSDEEATHTNTMSTNAQGMDTCCFCKNVIHDLISADDVVHQQINTFGQCFCMVCFQLFSKFEKLREHEISHRRDNSDGHLIACRLCAWSSNVYFTDADFFRLEKDLQCYMCSTKTSDLRTLRRHKRSHLSLCVFTCKVCNKRSISDERHRSHLRKHQKTEFSAVTNQIVRKCTMCSEEATNLFRDEEEIDEMFEKFGGGPCKICFTYINDKRRYVSHERGHMDEQQLIACLKCCNSKVYTDDEYHQFEDELKCFICDAKLSSKYNLHLHKRKHLDRVVYTCTICSALVVGTKNHSHHMYKHGLRKKNRNEEKGRFECDFCQKVFPHKSSLPAHFKQHLNKERVPCPQCTLTFASKGNLTQHIKQIHLNIRKHICELCGKAFGHPHNLKSHMVKHSGEKPYQCPICFKRFGYYSRMKTHAWIHSGLKPYKCDQCDKAYNDSTDLRRHKRIHGGVEKKFECELCKIKFYEHKYLRAHRASAHKFLVQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -