Phyg007781.2
Basic Information
- Insect
- Pseudolycoriella hygida
- Gene Symbol
- -
- Assembly
- GCA_029228625.1
- Location
- CM055403.1:90518897-90523626[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.24 29 6.9 1.4 1 19 133 151 133 156 0.89 2 13 0.17 21 7.4 3.5 2 23 161 182 160 182 0.95 3 13 0.017 2.1 10.6 0.5 1 23 189 211 189 211 0.98 4 13 1.5e-05 0.0018 20.2 2.5 1 23 222 246 222 246 0.92 5 13 0.025 3 10.0 0.7 2 23 248 269 247 269 0.96 6 13 3.2e-05 0.0039 19.1 0.6 1 23 277 299 277 299 0.98 7 13 0.4 49 6.2 2.1 1 21 302 322 302 327 0.92 8 13 0.024 2.9 10.1 1.6 1 23 331 354 331 354 0.96 9 13 0.47 58 6.0 1.4 2 23 359 380 358 380 0.97 10 13 3.2 3.9e+02 3.4 6.5 1 23 414 436 414 436 0.97 11 13 0.00043 0.053 15.6 1.7 1 23 441 463 441 463 0.98 12 13 0.00058 0.071 15.2 2.2 1 23 468 491 468 491 0.94 13 13 4.7e-05 0.0058 18.6 6.0 2 23 496 517 495 517 0.98
Sequence Information
- Coding Sequence
- ATGAGAGAAAATGCAGCCGAGCATAATATAGCCACGGTTTTAAAAGGTTTGTCAGCATTTCTGACTGATCTGTCGACATCGAGTAGACATGTTACGCCGAAGACAAGCGAAGAAACAAGCCAAAGGAAAAAGGCAAACAATTTGGGGAAGGCAGTCTACTCAGCATTTCCAAAACACGCAACCACCGAAAAGTCAAAATTGAAGTTAGTATACCAACAGCACCATTACGGGCTAAAAAATGCGAACTGTAACGAAAGAAGTCTAGCGAAACCAGTCGCTACGGCCGTACTTCAAGAGCAAAATAATGGCTTTTTGTGGACCATTCCAATTATAGACATTAACAATAGTCTCCCTTCAATTAGCGACGATCCAGTAATCATCAATGAGTCTTTTATCTATCGGTGCGAATTTTGTTCGGAACAATTCTCGTCAGATCAATTGTTGATCGACCACTGTGCCCGGATGCATACGAAAGACATAAAATGCCAATATTGTGAGAAAACGTTTTATTGGGAAAAAGATCTCCATTTCCATATGcgaaaacacataaaaaaaGGCAGAGGACATAAGTGTCAGATCTGCACTGGTTTATTTGCCAAAGGTGCAGAACTAAAAGAACATATGAAAGTGCATGACATAGAGAATGCTGGTGCGGAAGGTTCATATCCCTGCAACATTTGCGATAGAAAATTCAAAACTAGTAGAACACTACAAGAGCACAAACGACGTTTTTCCCATAAACAATGTGAAGTGTGCCTCGAATATTTTAGTTCCAATACCACATTGTTGCAGCATTTTAGTGTGCACGTGACTCAAGTGAAATCAACTTACAGTTGCGATCAATGTGATGaagttttttcgaagaaagTCTTACTCAAAATTCATCGCGACAAACATCGATTATATGTTTGTGAGTTGTGCTCAGCTGAATTTCGACGTAAGGACGACATTAAATGCCATTTACGATTGGATTGTACGAAAAAGAGTTTGTTCAACTGCTCCGTATGCAGCAAATCATTTCTCTCAGAGTGTAGTGTAAACGCTCACATGAACGTTCGACATTACGGAAAGAACAAATGTGAATTTTGTTCGGAAAGATTCCTTCACACAGCCGAATTGGTTGATCATCTAAAGTATCACGACATTGAACATCCGTACCAATGCCAAATTTGTTTATCACCAATGTCTTCGAAACGGATATTTAATTTTCACTTAAAATCACACAATGAGAAAACTAAATATAAATGCGAACGTTGTTGCCGATGGTTCTCGAGTGGATTTCATTTACAAAATCACATAAAAAAGCATGCGAAAGACACTTTCAAATGTACCATTTGTACGATGACATTTTCCGATCTGCAACGACTGGAGCAACATTCACGGAATCACGAAGAAAACGAGTTTCAATGTGATATTTGCAAGCAGTCGTTTCGAACTAGACATTTGATTTTCCTGCACATGATCGATTCTCATCAGTCTAGAAAGAAATGCCATATTTGCGACAAAGAATTCAAAAACCAAAGATGTTTGATGGCTCATCTCAAGAGTCACTATGTTAAAGTAGAATTTCCTGATGAGGTGGGTAGTATGTAA
- Protein Sequence
- MRENAAEHNIATVLKGLSAFLTDLSTSSRHVTPKTSEETSQRKKANNLGKAVYSAFPKHATTEKSKLKLVYQQHHYGLKNANCNERSLAKPVATAVLQEQNNGFLWTIPIIDINNSLPSISDDPVIINESFIYRCEFCSEQFSSDQLLIDHCARMHTKDIKCQYCEKTFYWEKDLHFHMRKHIKKGRGHKCQICTGLFAKGAELKEHMKVHDIENAGAEGSYPCNICDRKFKTSRTLQEHKRRFSHKQCEVCLEYFSSNTTLLQHFSVHVTQVKSTYSCDQCDEVFSKKVLLKIHRDKHRLYVCELCSAEFRRKDDIKCHLRLDCTKKSLFNCSVCSKSFLSECSVNAHMNVRHYGKNKCEFCSERFLHTAELVDHLKYHDIEHPYQCQICLSPMSSKRIFNFHLKSHNEKTKYKCERCCRWFSSGFHLQNHIKKHAKDTFKCTICTMTFSDLQRLEQHSRNHEENEFQCDICKQSFRTRHLIFLHMIDSHQSRKKCHICDKEFKNQRCLMAHLKSHYVKVEFPDEVGSM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -