Basic Information

Insect: Pseudolycoriella hygida
Gene Symbol: RREB1
Assembly: GCA_029228625.1
Location: CM055406.1:34240328-34247246[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00042 0.051 15.6 0.1 1 23 134 156 134 156 0.97

2 15 8.4e-05 0.01 17.8 1.0 1 23 165 187 165 187 0.98

3 15 9e-05 0.011 17.7 3.8 1 23 193 215 193 215 0.99

4 15 2.8 3.4e+02 3.6 0.1 3 23 278 300 276 300 0.82

5 15 0.16 20 7.5 2.9 2 21 306 325 306 326 0.94

6 15 2.4 2.9e+02 3.8 0.8 1 10 372 381 372 390 0.93

7 15 0.34 41 6.5 0.1 1 23 528 550 528 550 0.97

8 15 0.00012 0.015 17.3 1.0 1 23 559 581 559 581 0.99

9 15 0.0018 0.22 13.7 5.6 1 23 587 610 587 610 0.97

10 15 0.0039 0.48 12.6 1.4 1 23 929 952 929 952 0.95

11 15 0.00013 0.016 17.2 0.4 2 23 1225 1246 1224 1246 0.97

12 15 0.2 25 7.2 6.3 1 23 1252 1275 1252 1275 0.97

13 15 0.6 73 5.7 3.0 1 23 1334 1357 1334 1357 0.95

14 15 0.12 14 7.9 1.1 3 23 1403 1423 1402 1423 0.91

15 15 0.036 4.4 9.5 5.8 1 23 1429 1451 1429 1451 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00042	0.051	15.6	0.1	1	23	134	156	134	156	0.97
2	15	8.4e-05	0.01	17.8	1.0	1	23	165	187	165	187	0.98
3	15	9e-05	0.011	17.7	3.8	1	23	193	215	193	215	0.99
4	15	2.8	3.4e+02	3.6	0.1	3	23	278	300	276	300	0.82
5	15	0.16	20	7.5	2.9	2	21	306	325	306	326	0.94
6	15	2.4	2.9e+02	3.8	0.8	1	10	372	381	372	390	0.93
7	15	0.34	41	6.5	0.1	1	23	528	550	528	550	0.97
8	15	0.00012	0.015	17.3	1.0	1	23	559	581	559	581	0.99
9	15	0.0018	0.22	13.7	5.6	1	23	587	610	587	610	0.97
10	15	0.0039	0.48	12.6	1.4	1	23	929	952	929	952	0.95
11	15	0.00013	0.016	17.2	0.4	2	23	1225	1246	1224	1246	0.97
12	15	0.2	25	7.2	6.3	1	23	1252	1275	1252	1275	0.97
13	15	0.6	73	5.7	3.0	1	23	1334	1357	1334	1357	0.95
14	15	0.12	14	7.9	1.1	3	23	1403	1423	1402	1423	0.91
15	15	0.036	4.4	9.5	5.8	1	23	1429	1451	1429	1451	0.99

Sequence Information

Coding Sequence: ATGCTCAAATCAAGATCAAATCAACTTTCAGTGACAACTGAACGACGATCGTCGACAAACTCCGACTCGTCGATTGAGCCAATGGATATAAGTGCAAAAACTGTCAGCACTGATGCGAACTCTTCATTGACTGTTAAGAGTAGTGACCAAAATGATTCGGACAATGTAAATTCAGATCGTGAAGAGAATGACTATCGACAGAACATTGTTTGTCGAAACAGCTACTTCGATAATTATTTATACCGTAATCAGCTTCGTCATAGCATACCAAACAATAATAACGTTAAACGTTTTCATAAAATGGACGGCTCTCCCACCCGACTAAATACGTCGGAGAGCTTTTCGGATACCAATGACAATATGCACTCGAGTCCCGAATCTACATCGACGAATAATCGATATGCTTGCCCAATATGTGGAGTGGTATCTGATACGCAGCACGATTTTACAGAACATATTCGTGGTCACAACAGTATGGACGATGCTCAGAACTTCACCTGTCAAATATGCCATAAGGTTCTATCGTCCTCTTCCTCATTGGACCGTCACGTTCTAGTACATACAGGTGAACGTCCATTCACATGTAAATTATGTCTTGTAACATTCACGACAAATGGAAATATGCATCGACATATGCGTACGCACCGACAACGCGATGGAGACAACTACGAAAGTGACGGATCTACTGATTCGAGTGCTAGCAGTACAAACAACAACTACAGTAACGACGGGAAACGTAAAATCATTGATGATGATGGAACTAGCATGAAGCGTAGGCTGAAAACCATCAACAATAATAACATAGTTAAGAAGCAGCTCATCAGACTTAGCTGTCCGGTTTGTGTACGCAATGACTTTTCGAGCATTTACAGCTTAGAAAATCACATGGATAAAGAACATCCGAGtattccaccaaaatgccgtcAATGCGATGTGGTGTTCAAGAATCATAAAACACTAAACGGCCACCAATGTGGAGTGTCGAACAAAAATCACTTAGTTACGCATGGCTTCAAGGATTTAACATTCGTCGACTTTTCCAGCGATAAATTCCCGTTGATAGCAAAATCAATGTGTGAACAAGGCGTTCGCGCGCCTGTAAGCAATCAAAAATTCGAATGTCCCAACTGTAATCGGGCATTTCCATGTGTTAAAACCGTTGAGATACACAAAGAAAATTGCCGATCTACAGATGCACCACAAGACTTTTCGATACGCAAACGAAAAGCGAGCGAAACTTCCGACGAAGATGCCAAGCGAGACGATTTCTTCGCTCATCTAGATCTTCAAAATAAGTCGACGCCTCAAAGTGCTTCATTCAATGTAACCGATTCTGAGTCGAACAAATCACTCAATCAATCCGACGCAAAATCTGAACGTAAGATTCCATTGCCGTACGATACAAAGGACCTAGCTGACATTCAATCGATAATAAATGTAACATCGTCTGGAGGCTTTTTGAAGCAGTTGGACAAATCGGTGCCACATTTTGTGCCGAAAGAATTACCCTTTGCTCGCGACGAAGAGGAAGCTCAAGATGCATTTACTGCAgaatttcgtaaaatgaaaCTTCGCGGTGAATTTCCGTGTAAATTGTGTATGGcagtttttccaaatttgcgGGCGTTGAAAGGTCACAATCGGGTACATTTGAGCGCCGCTGGTTCGGGACCATACCGTTGCAACATGTGCCCGTTCTCCATTCATGACAAGGCAGCTCTTATAAGACACATGCGTACACACAACGGTGACCGACCGTATGAGTGCAGCCACTGcaattatgcgtttaccaccaaAGCGAATTGTGAACGTCATTTACGAAATCGACATGGTAAGACGACCAGAGATGAAGTGAAACGGTCAATTATTTACCATGCGTCAGAGGACTCCAGTTGTGATGATCCGGTGAAGAAAATGCAAATTTATAATGCGACCTATGACAATGACGACGTCGTTATCAAAGAACGTCATTCACCGTTGGCCAACCTCAAAGATATCGCTAGTGCTGAAACAATGAAAATACATGTTAAGAGTCTGGATCAACTCACCAAACCGACCATAGAGGAAATGGAGAGAGAAAAAGCTGTCAACAGCTTTGTGTCACATCAACGACCAATCGATTTGTCAATGGATGTTCTTGATCTCAGTCGTAAAGGCAGTGACACCACTAGCGAAGCGATTAAGGAAGAAGATGGTGACGACGACTATGAAGAAGACGAAGAAGAGGAAGAAGGCAACACGTCGAAAATAGATCTCTCAATGTTCGAAAAGAATCAACACTTTTTTATGGCTCAACAACAGCTTCTCAGTGAACATTTCCCGAAAATGGATCCAGCTCATTACTTCCATTTATCTCAAATTTATCGAAATTTAATGTTTTCTAGCGGTGGATTTCCGATCCATCCGCTTTTAATGCAATCTCCATTCATGACACCAAATGAACTGAAAGATGTCCATTCAAAGGACCGACCCAGACTGCCAATGTTCCAATCTGGCTTAATGGGATCGCAGATTTTTCCACCTCCTCCTGGTGCGGCGGCAAGCATTTCACCTCATACAATAAATCAAGCAAAAGAATTGCAACAGAGATCATCACCACCGTCACAGGATCATGCTAATGTTGTCAAAAGTCCGCAGATTGTAAGTCACAATCCCCAACAGCAGATAGCCTCCAGTACTCAGTCAACAAATTTAATCCACAATTCTGGTCCCGTTAAGATGGTCATAAAAAATGGCGTTCTTATGCCGAAACAAAAGCAACGTCGATATCGCACCGAGCGACCGTTTGCTTGTGAACATTGTGCAGCCAGATTTACGTTGAGATCAAATATGGAGCGACACATCAAACAACAGCATCCACAGTACTGGGCGCAAAGACAACGTAACGGACATAGCATTCTACGGCGAGGTAGTGGCAGCAACAATTCGGGACAAATTATTATTCCGCCGGAACATCCACCGCAACTACCTCCCCAATCTATTGGTAGTAACCCGTTAAGCTCAATATCTGACCAGGTCAAATTTGCCATTCTCTCTCAACAATTGAAGTGTCGTAATGAAAAACCATCGGATTATTTCTTGTCATTGCAATCGAGAAACGATTCTGATAATGGAAACACAATTCCACCACAACCGGAAGATGATGAAGAATCACAATTGATTATCGATGAAGACAGTGAGCCAGAGGATTTGTCAGCTGCTAAGAAAATTGCCAGCACCATTTTGGAAGAAGCGATACGATTGAAAAAATCTCAACCAAATCCTTTGGAAGTTAAAGATTTTGATCTAAATATTGCTTCGAGCCTTATTTCGAGGGACACGGCAAATAAATCTCAGAAAGAAATCAATGGATTGAAACGAGAAGAAGACAACAACATCGTTTCACCAACAAAAGATACCATCGCAAAATTAAATTCCATTGCCAATGGATCATCTCGAGAAGAAGGTGATTTGGTGTCGGTATCAAAATTGGTGGATAATGCCACAACCAATTCCATGAGTTTTGGTAATTACTTTCGTCCAGACATTGCCGTCAACGAGCATAGTGACGAAGAGGGCCTCGTAGCCAGTGGAAGTGCATCTGAAAGCAATAATTCCGGAACGGAAGATCCTAATCCAAcgaagaaaatcaacaagaagaAATCGGCCTACAGCCTTGCTCCAAATCGTGTATCATGTCCTTACTGTCAAAGGAAGTTTCCATGGAGCAGCTCATTGCGGCGCCATATTTTAACCCATACCGGTCAGAAGCCATTCAAGTGCTCCCATTGTCCATTGTTATTTACAACGAAAAGTAACTGTGACCGTCATTTGCTCCGTAAACACGGCAACGTTGAATCGGCTACCTCTTTATACGTTCCAATCGAAGATGTTCCCGAGCCCAGAAAAGAGCCGGTGAAAGATGAGCGACAGATTGTAGCCCCAGTTCAGCTGAACGTTCCAGTTTTAAAGCCGGTGGAACAGACCACTCCGAGTAGTATTAATAGCTCAGACTTGCCATTCAAATGTCATTTATGTGACGGTTCATTCAGTGAGCGCACTGCATGTTTAGATCACATTCGAAATCTACACACTCAAGATTTTACTCTACTGATGTCAAAAGGAGCCATCGAAGCTGATGCTGAACAACAAATTGCATCAGCAGAGGACgaggaaaaaaatgaaaatcgtggAAAGTATCCAGACTACGCAAATCGTAAGGTGATTTgtgcattttgtatgagaagATTTTGGTCGACAGAAGATCTTCGGCGACACATGCGTACGCATTCTGGAGAACGCCCATTCCAATGTAACATTTGTATGCGTAAGTTTACTTTGAAACATTCCATGCTACGCCACCAAAAAAAGCACACCAACACAAATCCAGTTGGTAACGGAAACAGCGCTTCCGATTTATCCGACGAAGAGTCAACCAGTATGGTTGTTACGAATCCATTGTCGAGGTTGTTGAAAATTCCCGATTTGATTCCCAAAGAATTGTCATGGAAGTTGCAAAACGAATTGAGACGTAGCGATTTTGCACGTGGTGAAGGTGAAGAAACGTCAGAGTTGATTGGAAATCTGCTGGGCATCAGCGATCCGAGAATTTTGAATCGAGTTTTCCTATCGTCACCTGACGAGGCAGCTAAGCTGTTAGGAGTTGAAAAGTAA
Protein Sequence: MLKSRSNQLSVTTERRSSTNSDSSIEPMDISAKTVSTDANSSLTVKSSDQNDSDNVNSDREENDYRQNIVCRNSYFDNYLYRNQLRHSIPNNNNVKRFHKMDGSPTRLNTSESFSDTNDNMHSSPESTSTNNRYACPICGVVSDTQHDFTEHIRGHNSMDDAQNFTCQICHKVLSSSSSLDRHVLVHTGERPFTCKLCLVTFTTNGNMHRHMRTHRQRDGDNYESDGSTDSSASSTNNNYSNDGKRKIIDDDGTSMKRRLKTINNNNIVKKQLIRLSCPVCVRNDFSSIYSLENHMDKEHPSIPPKCRQCDVVFKNHKTLNGHQCGVSNKNHLVTHGFKDLTFVDFSSDKFPLIAKSMCEQGVRAPVSNQKFECPNCNRAFPCVKTVEIHKENCRSTDAPQDFSIRKRKASETSDEDAKRDDFFAHLDLQNKSTPQSASFNVTDSESNKSLNQSDAKSERKIPLPYDTKDLADIQSIINVTSSGGFLKQLDKSVPHFVPKELPFARDEEEAQDAFTAEFRKMKLRGEFPCKLCMAVFPNLRALKGHNRVHLSAAGSGPYRCNMCPFSIHDKAALIRHMRTHNGDRPYECSHCNYAFTTKANCERHLRNRHGKTTRDEVKRSIIYHASEDSSCDDPVKKMQIYNATYDNDDVVIKERHSPLANLKDIASAETMKIHVKSLDQLTKPTIEEMEREKAVNSFVSHQRPIDLSMDVLDLSRKGSDTTSEAIKEEDGDDDYEEDEEEEEGNTSKIDLSMFEKNQHFFMAQQQLLSEHFPKMDPAHYFHLSQIYRNLMFSSGGFPIHPLLMQSPFMTPNELKDVHSKDRPRLPMFQSGLMGSQIFPPPPGAAASISPHTINQAKELQQRSSPPSQDHANVVKSPQIVSHNPQQQIASSTQSTNLIHNSGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCAARFTLRSNMERHIKQQHPQYWAQRQRNGHSILRRGSGSNNSGQIIIPPEHPPQLPPQSIGSNPLSSISDQVKFAILSQQLKCRNEKPSDYFLSLQSRNDSDNGNTIPPQPEDDEESQLIIDEDSEPEDLSAAKKIASTILEEAIRLKKSQPNPLEVKDFDLNIASSLISRDTANKSQKEINGLKREEDNNIVSPTKDTIAKLNSIANGSSREEGDLVSVSKLVDNATTNSMSFGNYFRPDIAVNEHSDEEGLVASGSASESNNSGTEDPNPTKKINKKKSAYSLAPNRVSCPYCQRKFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESATSLYVPIEDVPEPRKEPVKDERQIVAPVQLNVPVLKPVEQTTPSSINSSDLPFKCHLCDGSFSERTACLDHIRNLHTQDFTLLMSKGAIEADAEQQIASAEDEEKNENRGKYPDYANRKVICAFCMRRFWSTEDLRRHMRTHSGERPFQCNICMRKFTLKHSMLRHQKKHTNTNPVGNGNSASDLSDEESTSMVVTNPLSRLLKIPDLIPKELSWKLQNELRRSDFARGEGEETSELIGNLLGISDPRILNRVFLSSPDEAAKLLGVEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00246636; iTF_00245760;
90% Identity: -
80% Identity: -