Basic Information

Insect: Pseudolycoriella hygida
Gene Symbol: -
Assembly: GCA_029228625.1
Location: WJQU01003778.1:19760-21497[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.029 3.5 9.8 0.5 2 23 215 237 214 237 0.94

2 10 0.32 39 6.5 1.8 6 23 246 263 240 263 0.96

3 10 0.00039 0.048 15.7 0.4 1 23 269 291 269 291 0.97

4 10 0.00024 0.03 16.4 0.2 1 21 299 319 299 322 0.90

5 10 0.00065 0.079 15.0 0.3 2 23 326 348 325 348 0.95

6 10 2.9e-05 0.0036 19.3 0.1 2 23 357 379 357 379 0.95

7 10 0.0023 0.28 13.3 0.8 2 23 388 409 387 409 0.97

8 10 0.0084 1 11.5 1.3 2 23 416 438 416 438 0.95

9 10 7.8e-05 0.0096 17.9 1.1 3 23 445 465 443 465 0.94

10 10 0.0006 0.074 15.1 1.9 1 23 471 494 471 494 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.029	3.5	9.8	0.5	2	23	215	237	214	237	0.94
2	10	0.32	39	6.5	1.8	6	23	246	263	240	263	0.96
3	10	0.00039	0.048	15.7	0.4	1	23	269	291	269	291	0.97
4	10	0.00024	0.03	16.4	0.2	1	21	299	319	299	322	0.90
5	10	0.00065	0.079	15.0	0.3	2	23	326	348	325	348	0.95
6	10	2.9e-05	0.0036	19.3	0.1	2	23	357	379	357	379	0.95
7	10	0.0023	0.28	13.3	0.8	2	23	388	409	387	409	0.97
8	10	0.0084	1	11.5	1.3	2	23	416	438	416	438	0.95
9	10	7.8e-05	0.0096	17.9	1.1	3	23	445	465	443	465	0.94
10	10	0.0006	0.074	15.1	1.9	1	23	471	494	471	494	0.97

Sequence Information

Coding Sequence: ATGAACTCAAATTCGAATGAAAAACTGTGTCGCCTGTGCATGCAAGAATCCGAAGATGTCGTGAATGTCCTTGAGAAGTTCGAAAACACAACAATTGCTTCCATTTTAGAACAACACTTTTGGTTTCAGGTTGTTTTGTCTTGTGTTGAGTGTTTGTACCCAAAGAAAACTGACAAATTCGATCCACAGGTTGGAAGAAACGATGAATTATCGGAATTCCTGTGCCAAATCTGTTGGAATAACACAAAAACCTTTCACATCTTTTACGAAGAGGTGGAATTGCTGCAGGAAGATTATTGGAATTTGGCTAAGACAGCTGGTACGGCTGGTACCAATCTCCGCACTGATTTCATTAAGCAAGAACCGAGTGACACGGAATTGCAAATTGAAGAAACGAGACTAGAATCTTCAGCAATGATTTTGGATGTTAAAGGAAATGAAACAATCTTTGCGACTTACGATCAAACACTCGCAGAAGATTTGGACGAGAAACAGCGAACAGAAAAAATTACACACAGCATTTCGGAAGAAAACAGTGCGACTACGGTGGAAAAACCTAAAAAAGGAAGGAAACCATACCCATACGAGCATCGACTGAATAACGACTACTTGGACGCTCACCTAAAGGTGTATTTCAGTATGAAATGTGATATCTGCGGCGATCCATTCAAAACGTATCGCAACGCTCGAGAACACTTTCGTGAAACTCACAGAATGAAATGTTATTTGATTTGTTGTCGGAAAAGATTCCGTCGCCGTGGGGCCGTCTTAGATCAcatcaaatatcatttaaacCCAGACGCATTTACGTGTAAACAATGTGGTCGAAAGTTTGCTAGCAGGGCTGCGCGAACGTTGCATATTGCAAACCATGAACCAATGAGCACACGCCCGTTCAAATGTGACCTATGTCCGAAAAGCTTTCCGAGAGAAATTGCCCTGACGGTACATAAAGATTTTGTGCACTTGCCAGTTAAATGTGTCGAATGTGACATGACTTATccgtcaaagtcaaagttgtcaaCTCACGTTAAAAACGCTCATAAGCCGAAAGTTACGACTACACGAGTCTGTGATATCTGCGGCAAAGATTATGCAAACAAATATTCGTTGTTGATCCACATGCAGGAACAGCATTCAGCTGTTAAAAATCCTGGAGTTCAATGCGATATTTGCGGCACTTGGTTAAAACAAAAGTCAAGACTTCGCAATCATATGAAGCAGCACCAGGAAACTGTTCCTGCTCAATGCAAACTTTGTGGTAAAGTAAAGAAGAGCGAatttttattgacaaaacaCATGCAATTTGTTCATACGGAGAAAAAGCATCTTTGTACAATATGCAGCAAATCATTTAGGACGGCACTTAGTTTAAAGGAACACATGGCGGGTCACGCTGGTCAGAACTTATATGACTGCGCTTATTGTACTAGAACATTCAGATCATACGCGAATTGGTCCTCCCATCGAAAAAAGATGCACACTGCAGATTGGATTAAAGATGGTGGGAGAAAACGCTCTCTTTTAAAACAATCTCCGACAAAATAA
Protein Sequence: MNSNSNEKLCRLCMQESEDVVNVLEKFENTTIASILEQHFWFQVVLSCVECLYPKKTDKFDPQVGRNDELSEFLCQICWNNTKTFHIFYEEVELLQEDYWNLAKTAGTAGTNLRTDFIKQEPSDTELQIEETRLESSAMILDVKGNETIFATYDQTLAEDLDEKQRTEKITHSISEENSATTVEKPKKGRKPYPYEHRLNNDYLDAHLKVYFSMKCDICGDPFKTYRNAREHFRETHRMKCYLICCRKRFRRRGAVLDHIKYHLNPDAFTCKQCGRKFASRAARTLHIANHEPMSTRPFKCDLCPKSFPREIALTVHKDFVHLPVKCVECDMTYPSKSKLSTHVKNAHKPKVTTTRVCDICGKDYANKYSLLIHMQEQHSAVKNPGVQCDICGTWLKQKSRLRNHMKQHQETVPAQCKLCGKVKKSEFLLTKHMQFVHTEKKHLCTICSKSFRTALSLKEHMAGHAGQNLYDCAYCTRTFRSYANWSSHRKKMHTADWIKDGGRKRSLLKQSPTK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -