Phyg047646.1
Basic Information
- Insect
- Pseudolycoriella hygida
- Gene Symbol
- -
- Assembly
- GCA_029228625.1
- Location
- WJQU01002037.1:13335-18846[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00035 0.043 15.9 2.8 1 23 121 144 121 144 0.97 2 13 0.086 11 8.3 0.8 1 20 223 242 223 244 0.94 3 13 0.0014 0.17 14.0 1.0 1 21 279 299 279 300 0.95 4 13 0.0007 0.086 14.9 8.7 1 23 323 345 323 345 0.98 5 13 4.3 5.3e+02 3.0 0.6 3 10 360 367 359 376 0.85 6 13 0.021 2.5 10.3 0.2 1 23 406 428 406 428 0.97 7 13 0.045 5.5 9.2 0.5 1 23 432 457 432 457 0.97 8 13 0.51 62 5.9 3.7 1 21 463 483 463 484 0.96 9 13 6.3e-05 0.0077 18.2 1.8 1 21 491 511 491 512 0.96 10 13 6.4e-05 0.0078 18.2 1.7 1 23 519 541 519 541 0.97 11 13 1.5e-05 0.0019 20.2 0.2 1 23 547 569 547 569 0.96 12 13 0.00053 0.064 15.3 3.0 1 23 575 597 575 597 0.98 13 13 0.0027 0.33 13.1 5.6 1 23 603 626 603 626 0.95
Sequence Information
- Coding Sequence
- ATGGATTTGAAATTAGATATAGATCCACATTCAGTTTGTCgaatttgtttgttgcaaaagtCGCCAACAAACAATTTGGgcaattttttcgcaaatactgTTGTTGAAGGGTACATAATATTCGTTCCGGACATGGTGCAGAAATGCCTAGGTATTGAATCCAGTGCCAATGACGGTCTCCCCGATAAAATCTGCGATGTTTGCAAAAAGGAAATCACAGGATTTTATCTGTTCAAAGAAAAATCAGCTCGAACGGAGCAAATTCTATTGACTGCATTCGATAAGCCAGTCAAAAGTAAGGAAAGGAAAGTTCCGCCAGAGACAACCTCAATAGCCATTCAGACAATGCCAGAGCATTCATTTAGTTGTTTGGAATGTAAAATCAGCTTCAAGACAGAACATTTATTGAGTAATCACATTCGCCAAAAGCATTCAACAAAAAGAGAGACTGGCATCCAAACGGATCTAGAGAATAGCATCACGGAGGACAGTTTCATCGAAGAGGAGCCAATTGAGTTTAATTACAAGCGAGAAATGAAAATGGAAGCTCTTGAAGTAGACGATCTGGATATTGATGACATGCAACCAGATATGGACGATGCAGCGACTGAACAGATAAGCGATACCCAACAGGATTATGAGATGATTGATAAAGTGCAGGACGAATATCAATGCAACGATTGCTTGGAGATATTTCCACAATTCGATGATATTCAAAACCATAAGTGTCAGAACAAAGTGATCGTTCGTATTGTAAGTGAAACTACGAATCCATTGGAGTCGGACGATTTATCTGAAAATTATTTCGAAGAGCTGATCAACGAGGTTGATGTGTATGAATGCTATCGCTGTCATGCGACGTTTAATACTTCCGACGACTTGAACTTGCATCGTAATAGTGATGACTGTCAGCCAGATGATTCGTTGCTTAAGATTCAAAGCCAGAAGCCGAAAGTGGACGAAGACCATCAATGCAATTTATGTCACAAGCGATTCAAAACTTCAACTACTTTCAATCAACACCAGAAGCTTCATGAGTCCATTGAAATCGTCATCGATTACTTAGGCTGTGCACCCTGTGACGAttgtcacaaaatttttttagttaaagaTCATGAAGAAACACACGACTGTCCGAAAAAGAAAAAGAGCAGCGACGGCGACTATATTGATGAATCGTGCACCGATTATCAGTATCTGGAACAAGATAGTGATTTCACTTGTGACATATGCTCCATGGAATTTCCGAATCTCAACACAGCCAAGCAGCATGTGGTGACGCATGCAAAAGAATTTGTTTGTCCATTTGAAGGGTGTGGATGTTCGTATGAAATTTGGTCTCGATTTGCCATGCATTTGAACACGAAACATTTGAATTCGAAGCGATACCAATGCAGATTTTGTGAATGCGTGTGCGAATCATTCGATTCGTTGCAAGCTCATTACAAGGATGAATGTCcggaaaagaaattcaaatgcaACCATTGTGATAAATCATATTTTTCGCAAAAAGCGCTGAATCTTCACATCAAAGACATAACGAAAGGGAAGACTTTCAACTGTACGTTTTGCGAAAAATCCTTCAATCGACGAGGTGAACTGGAACTTCATAATCGATCTCATACAAATGAAcgGCCCTACAAATGTACGATTTGCGGTAAGGCATACAAGACATCCAGCATGCGGGCTGCTCATATGGACGCGCATATCGAGGGGAAAACATTTCCATGTACAATGTGCGATAAAAAGCTCCAAACAAGAACGAGCTACAGAAATCACATGAAACGTCATACGGAAGAGAAGAAGCATCAGTGCGAATACTGTGGAAAGAAGTTCTTCaccaaatttcatgtaaaattacaTGCGTCGAAGATCCACATCAAGCCAAAAACGAAGTCTCTCAAATCAACCACAAATATTATTCAGTTTGAATACGAAGACATCGTTGAATCAATGGACGACGAAAACGTAGAGGCTTCGTTTCACTAA
- Protein Sequence
- MDLKLDIDPHSVCRICLLQKSPTNNLGNFFANTVVEGYIIFVPDMVQKCLGIESSANDGLPDKICDVCKKEITGFYLFKEKSARTEQILLTAFDKPVKSKERKVPPETTSIAIQTMPEHSFSCLECKISFKTEHLLSNHIRQKHSTKRETGIQTDLENSITEDSFIEEEPIEFNYKREMKMEALEVDDLDIDDMQPDMDDAATEQISDTQQDYEMIDKVQDEYQCNDCLEIFPQFDDIQNHKCQNKVIVRIVSETTNPLESDDLSENYFEELINEVDVYECYRCHATFNTSDDLNLHRNSDDCQPDDSLLKIQSQKPKVDEDHQCNLCHKRFKTSTTFNQHQKLHESIEIVIDYLGCAPCDDCHKIFLVKDHEETHDCPKKKKSSDGDYIDESCTDYQYLEQDSDFTCDICSMEFPNLNTAKQHVVTHAKEFVCPFEGCGCSYEIWSRFAMHLNTKHLNSKRYQCRFCECVCESFDSLQAHYKDECPEKKFKCNHCDKSYFSQKALNLHIKDITKGKTFNCTFCEKSFNRRGELELHNRSHTNERPYKCTICGKAYKTSSMRAAHMDAHIEGKTFPCTMCDKKLQTRTSYRNHMKRHTEEKKHQCEYCGKKFFTKFHVKLHASKIHIKPKTKSLKSTTNIIQFEYEDIVESMDDENVEASFH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -