Basic Information

Insect: Pseudolycoriella hygida
Gene Symbol: Kr-h1
Assembly: GCA_029228625.1
Location: CM055403.1:88000753-88005385[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.011 1.4 11.1 2.3 1 23 100 122 100 122 0.98

2 8 1.2e-05 0.0015 20.5 0.5 1 23 147 169 147 169 0.99

3 8 2.3e-05 0.0028 19.6 0.7 3 23 177 197 175 197 0.98

4 8 4.5e-06 0.00055 21.8 3.3 1 23 203 225 203 225 0.99

5 8 5.2e-06 0.00064 21.6 1.9 1 23 231 253 231 253 0.98

6 8 0.00016 0.02 16.9 1.6 1 23 259 283 259 283 0.99

7 8 0.067 8.2 8.7 2.3 1 23 289 311 289 311 0.95

8 8 1.5e-06 0.00018 23.4 0.5 1 23 317 339 317 339 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.011	1.4	11.1	2.3	1	23	100	122	100	122	0.98
2	8	1.2e-05	0.0015	20.5	0.5	1	23	147	169	147	169	0.99
3	8	2.3e-05	0.0028	19.6	0.7	3	23	177	197	175	197	0.98
4	8	4.5e-06	0.00055	21.8	3.3	1	23	203	225	203	225	0.99
5	8	5.2e-06	0.00064	21.6	1.9	1	23	231	253	231	253	0.98
6	8	0.00016	0.02	16.9	1.6	1	23	259	283	259	283	0.99
7	8	0.067	8.2	8.7	2.3	1	23	289	311	289	311	0.95
8	8	1.5e-06	0.00018	23.4	0.5	1	23	317	339	317	339	0.98

Sequence Information

Coding Sequence: ATGGTATACTACACGGCATTACCACTTATAATGCAAGCGGATCAAAATGCAGCCCAAATTTGTTCAAGTGTAAAAAGCGAGGATGAGTCTGCACGAATGATTAATCCAAGCAATAATATGTTATTTTCCGAAAACGAACAGTACAGTCACTCAAACCAACATAGCGAAAAATTGGCCTTACCTACTCACATGGGATCGCTACCAGCACAACACCAACAACATAATCCATCAACGTCACCGCAACATCAACGTCATCCCACGCCTACGCAAAAGAAGCCAAATCCACAAAAAGCTCAATTCAAATGTGACCAATGCAATATGATTTTTGGGAGTAAAAGTGCGCACACAAGTCATATAAAAAGTCATGTGAAGACAGCTCAGCAAAATGGACTCGTATCATCGGTCGGTGATTTAAGTTCTCCGAATACTTCCGACCCTTACCAGTGCGACGTATGTAAGAAAACGTTCGCCGTACCAGCTCGATTGGATCGTCACTATCGCACTCATACTGGCGAGCGCCCATTCGGATGTGACTTTTGTGAGAAGCGATTCAGTGTTAAAGAAAACCTTCAAGTTCACCGAAGAATTCATACGAAAGAAAGACCGTACAAGTGCGAAGTTTGTGGACGCGCTTTTGAACACAGTGGCAAACTACACAGACACTATCGAATTCACACTGGTGAGAGACCACACAAGTGCAATGTGTGCAATAAGACTTTTATTCAGTCTGGTCAGCTTGTTATTCACAACCGTACGCATAGCGGTGAAAAGCCATACAAATGTCCAGTCGATGGTTGCGGAAAAGGTTTCACATGTTCCAAGCAATTGAAAGTACACTCCAGAACGCACACGGGtgaAAAACCATACAAATGTGATATTTGCTTTCGAGACTTTGGATACAATCACGTTTTGAAGTTGCACCGAGTGCAGCACTACGGTTCGAAGTGCTACAAATGTACAATTTGCGATGAAACGTTTAAAAGTAAAAAGGAAATGGAAGCACACATAAAAGGTCATGCAAGTGAAATCACCGACGAAGATGGAAACGATTCAACTTTGTCAACAGAGATAGATACGCGAAAAAATCACAATTTGAACAATCTGATGACGGCTATGGCTAAGCCCAGTACATACACCGAAACACCTAGAGAATCCAGCTCGGAAGCTAATTCAGACGCAGATGAATTGGCTTACTATAATCTTCAGTTTTCCAGACTCGATCAGTCCAACATTAGCAGCTATAATATTGAACAGGCGTCAGGTGTTGATCCCGCTCTTCTTGCCGCTGTTTCCTTAGCCGCCTCAGTGGTTGGTAATGGTGACCTTAACGATTATGGGTCTACGTCACCAAACAAAACACATTTAAAAAATACGTCAGGACTTTGTACGCCAACATCTCTTAACCAAAATAGTTTCAACCAAAACAATCTTGTCTACGAGCCTCTAGCTGTTATGCGACAACAGGGTTACTTTGCACCAGCTCCCAGAGTCGAAGAATTTCGTTCGTCTATCGATGGCGCGAGTGAAATTGTTAAACGGGTCGAAGCTGCATTGGCAGGTGCCGAGCCGTTATTGACACCGCCAACATCATCACCTGAATCACCGGATCGTTCATCATCGCCCGAAAGCGATGCAGTGCTGATGGCCAATAGAGACAATATGAGCTTACCATTGCGGAAACGAAAACTTTACATTCAAGACAATCAAAACGACGAATCGCCGGTTATGCGATTGAGCTCCGTTATACAATTTGCTAAAGCATCTTAA
Protein Sequence: MVYYTALPLIMQADQNAAQICSSVKSEDESARMINPSNNMLFSENEQYSHSNQHSEKLALPTHMGSLPAQHQQHNPSTSPQHQRHPTPTQKKPNPQKAQFKCDQCNMIFGSKSAHTSHIKSHVKTAQQNGLVSSVGDLSSPNTSDPYQCDVCKKTFAVPARLDRHYRTHTGERPFGCDFCEKRFSVKENLQVHRRIHTKERPYKCEVCGRAFEHSGKLHRHYRIHTGERPHKCNVCNKTFIQSGQLVIHNRTHSGEKPYKCPVDGCGKGFTCSKQLKVHSRTHTGEKPYKCDICFRDFGYNHVLKLHRVQHYGSKCYKCTICDETFKSKKEMEAHIKGHASEITDEDGNDSTLSTEIDTRKNHNLNNLMTAMAKPSTYTETPRESSSEANSDADELAYYNLQFSRLDQSNISSYNIEQASGVDPALLAAVSLAASVVGNGDLNDYGSTSPNKTHLKNTSGLCTPTSLNQNSFNQNNLVYEPLAVMRQQGYFAPAPRVEEFRSSIDGASEIVKRVEAALAGAEPLLTPPTSSPESPDRSSSPESDAVLMANRDNMSLPLRKRKLYIQDNQNDESPVMRLSSVIQFAKAS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00246621; iTF_00245750;
90% Identity: -
80% Identity: -