Phyg017943.1
Basic Information
- Insect
- Pseudolycoriella hygida
- Gene Symbol
- -
- Assembly
- GCA_029228625.1
- Location
- CM055404.1:22333609-22343186[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 2.8 3.5e+02 3.6 0.0 9 23 334 349 331 349 0.93 2 16 0.76 93 5.4 0.5 2 21 378 397 377 398 0.93 3 16 6.5 7.9e+02 2.4 0.5 3 23 441 462 440 462 0.91 4 16 3.1e-05 0.0038 19.2 3.5 1 23 468 490 468 490 0.96 5 16 0.00019 0.023 16.7 0.6 1 23 496 518 496 518 0.94 6 16 2.2e-06 0.00027 22.8 5.0 2 23 525 546 524 546 0.97 7 16 0.16 20 7.5 0.3 1 20 598 617 598 620 0.90 8 16 0.0034 0.41 12.8 1.8 1 23 626 648 626 648 0.98 9 16 0.00048 0.058 15.4 2.1 1 23 661 686 661 686 0.95 10 16 1.1 1.4e+02 4.8 1.8 2 23 694 716 693 716 0.84 11 16 0.00048 0.059 15.4 0.4 2 23 721 743 721 743 0.96 12 16 0.0014 0.17 14.0 0.4 2 23 770 792 769 792 0.95 13 16 1.2e-06 0.00015 23.6 1.2 1 23 798 820 798 820 0.98 14 16 0.037 4.5 9.5 1.9 1 23 826 848 826 848 0.97 15 16 0.0003 0.037 16.1 3.4 1 23 854 876 854 876 0.98 16 16 0.82 1e+02 5.3 2.8 1 17 882 900 882 907 0.87
Sequence Information
- Coding Sequence
- ATGTCCGAAAGTGAAAAACGTGATAAACCAAAGAAATGCAAGTGCTGCAACACGCCAATATCGAAATCGTTCCGCTATATTTACGACGAAGAAGGTAAAGAATTGAACATcgaatttttattgtttgactGCGTAGGAAAGAAAGTTCATGAGAAAAATGGCCTGGATCAAGCGATTTGCACTAAATGTCTTTTACAACTGCAACAGAgttatgaatttaaaaaaaagtgcctGGAGGCTGCAGATGATAGTGAAGATAGCAGCAGTGAGATTGAGATTTGTGAAAAGTCATCTCCGAAGTCTGAAATCTTTACCAATGAGGAATATCTAACCGAAGTAGACGACCCGATGTTCAATGTAATGAAGGAAGAGCTTTTGATTGAAGAACCATTCGAGGAACACACGCACAAAAATGATGAAGACGAAGTCAAATACgttgaaattattgaatttattgaagACGTTAACAAGGACACGTCACCCAAATCTCAACAGCATGTGAATGACAAATTGTCCACATCGATCACTCTTCCAACGGTTAAGATAAAATTCGCCAAAAATGTTCCATCGCATCCCATCAAATTCAAACCGGAAAAACTTGCCAACTCGAAGGCAATTGACGTCGAGAAAATTCGTAATTCAGACGATTTAGTTGATATTTTGGAAGATGATTACCAGAGCGAAAGCGATTCGATTCGAAAACGCTTAACGGATACGGCAGATGAGTTTAAGATTCCAAAAATCGAAGTGGAAGACTTTTGCGACAATATTGAATATTTGGACGAATCGAAACCCATTGACATGGACGAGTACATTAAGCAGGTGACGTTAATCAGCTACgacgaaaagaaaaactttctttcGCATATTCAATGTGTGATGTGTGACAACGACGaagtcaaattgaaaaacttccggGCAATCGTTCAACACATGTACAACGAACATCATGACGGAAACATTGATCAATTCGCTTGTTTGATAAGCGCCCAGTGTGGTTCTTACACGAATTTGGATGATCTGAAAAATCATTACGCAACCGATCACCAAGATATTATCACGTTAGTTGATGCTTTTCTCGTCAACAACAATTTAAGCGAACTTTTACATTTTAGGCCATCGTTGAAACTCAAATGTTTGACATGTGATATGATTTTTGATTCACCGATTAAGTTTGGGAAACATATTtgtcaagatgactatcagatCAAAGAATCTGAAAAGGATTTCAAATGCTCCTTGTGCAAGAAGCAGTTGACATCGAGAAAAAGGCTTCTATTTCACAAGCAATTTCACATTTCCAATCAAAGACCGAAATTTTGTTTGGTGTGTCAGACTAAGTACGAAGATGAGAACAGCTTCTATGAACACGTAATGTTCTCCCATGAACAAGTTTTCGAGCATTTTTGCACTCAATGCGACAAAAGCTTTTCAACTGAAACGGACCTCACTCGCCACGAAAACTCACACTCTGCGCAGCGAAATTATAAGTGTTCGGATTGTGGTAAAAAGTTTATGGACAGCCAAACGTTAAGCGAACACAGCGTGGTGCACTTACCGGAGAAGCCACTGaaatgcgatatttgtgataaATGTTACACTCGAAAATCTCGTCTGCAGAAACATATGAAATCACATGCAGTCTTCGAATCTTCAACGTTTATAATGTGCGAAATATGCAATGCTGCGTTACTAGACGATGAGAGTGCCGTGGAGCACCTTCGTGTATCACACAACGAAGTCAATGATTCAGATGAATTTCTTTTTGGTTGTCAAAAATTTGACAAAGTCTTTGTCTGTGAATATTGTGATTTGGCCTTTGGTACCGCTGAAGCGGTATTAATGCATCGTGAGTGCCACACCGATGAAGTAAAGTTTCAATGTCCTTACTGTGATAGTAAATTCGACACATTCAGCAAGAAGAGAACCCACATTTTGATACACAAATCCAAAATTACAACTTTTCCCGTTGCTCGCTATTTCATATGCGACCAAGACAATTGCTTTAAGTCATACATTCACTGGTCCAGCTTGACAGCACATCGTAAGACAAGACATTTGATAAATCCATCGATCATCAAATGTCCGGAATGCCCAGAGACTTTCTACTGCAGTTGGAAATACGATTATCATAAAAAAACGGTACACAATGAATGCGAATCATGTCCGATTTGTAGCAAAGgattttataagaaaaaatcGTTAGACATACACATACAACGTGTGCATATCGATGATCAAAGAAAACGTATGAATAGTAAAGGAGAAGTAGCTGAAACGATGATTGTCGAAACTAACGGTGAAATCAGTTGTAAGGAATGTGGCAAAATATGTCCCACAAGGTACAATGCCATCAGTCACATATCAATGGTTCATTTAAAAGTTCGGAATTTCCAATGTAGTGTTTGTGATAAAAGTTTCTATCAAAAAGGAGATCTGAATGATCACTACCGACTGCATACAAAAGAGAAGCCATTTTCCTGTCAATTCTGTTCATATACGTCTAGGAAACGATCAATGTTGGTGACACATGAGCGGGCTCACACAAACGAACGACCATTTCAATGTCCACGATGTCCTTGTGCATTTAAGCGCTCGTATGtcttaaaaaatcatttaaaatatCACGATGGTGTCAAAGAATTCCAATGTTCAGTTGAAACCTGTAGAAAAATGTTCACAACGAACGCAGCTCTCAATTTCCATTGCAAGTCTAAGCACAATGACACGGCTAATGGAAATGTCGATATACGTGTGACAGAAACGAACACCAAAGAGGAAACGCCTCAAGCGGTAAAACGTGCAAGTaaacgaaaaattccaaaaattgtttatgttttGCCGGGTAAGCGGGACTCGGAAGAAACTCGAAGTAAAATAGCTAGAACTGAAACCGAAGCTTCAATTCCTGATTCAATGAActga
- Protein Sequence
- MSESEKRDKPKKCKCCNTPISKSFRYIYDEEGKELNIEFLLFDCVGKKVHEKNGLDQAICTKCLLQLQQSYEFKKKCLEAADDSEDSSSEIEICEKSSPKSEIFTNEEYLTEVDDPMFNVMKEELLIEEPFEEHTHKNDEDEVKYVEIIEFIEDVNKDTSPKSQQHVNDKLSTSITLPTVKIKFAKNVPSHPIKFKPEKLANSKAIDVEKIRNSDDLVDILEDDYQSESDSIRKRLTDTADEFKIPKIEVEDFCDNIEYLDESKPIDMDEYIKQVTLISYDEKKNFLSHIQCVMCDNDEVKLKNFRAIVQHMYNEHHDGNIDQFACLISAQCGSYTNLDDLKNHYATDHQDIITLVDAFLVNNNLSELLHFRPSLKLKCLTCDMIFDSPIKFGKHICQDDYQIKESEKDFKCSLCKKQLTSRKRLLFHKQFHISNQRPKFCLVCQTKYEDENSFYEHVMFSHEQVFEHFCTQCDKSFSTETDLTRHENSHSAQRNYKCSDCGKKFMDSQTLSEHSVVHLPEKPLKCDICDKCYTRKSRLQKHMKSHAVFESSTFIMCEICNAALLDDESAVEHLRVSHNEVNDSDEFLFGCQKFDKVFVCEYCDLAFGTAEAVLMHRECHTDEVKFQCPYCDSKFDTFSKKRTHILIHKSKITTFPVARYFICDQDNCFKSYIHWSSLTAHRKTRHLINPSIIKCPECPETFYCSWKYDYHKKTVHNECESCPICSKGFYKKKSLDIHIQRVHIDDQRKRMNSKGEVAETMIVETNGEISCKECGKICPTRYNAISHISMVHLKVRNFQCSVCDKSFYQKGDLNDHYRLHTKEKPFSCQFCSYTSRKRSMLVTHERAHTNERPFQCPRCPCAFKRSYVLKNHLKYHDGVKEFQCSVETCRKMFTTNAALNFHCKSKHNDTANGNVDIRVTETNTKEETPQAVKRASKRKIPKIVYVLPGKRDSEETRSKIARTETEASIPDSMN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -