Phyg018593.1
Basic Information
- Insect
- Pseudolycoriella hygida
- Gene Symbol
- -
- Assembly
- GCA_029228625.1
- Location
- CM055404.1:31439990-31442761[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.028 3.4 9.9 0.6 1 23 33 55 33 55 0.98 2 20 0.017 2.1 10.5 1.5 2 23 136 157 135 157 0.96 3 20 1.5 1.8e+02 4.5 0.1 1 21 179 199 179 202 0.83 4 20 2 2.4e+02 4.1 0.0 6 23 214 232 214 232 0.94 5 20 0.00078 0.095 14.8 4.7 1 23 290 313 290 313 0.97 6 20 0.13 16 7.8 0.7 1 23 363 385 363 385 0.96 7 20 3.5 4.2e+02 3.3 1.4 1 23 417 440 417 440 0.93 8 20 0.0036 0.44 12.7 0.4 2 23 481 502 480 502 0.97 9 20 0.00048 0.058 15.4 1.4 1 23 508 531 508 531 0.96 10 20 0.16 19 7.5 0.9 2 23 541 563 540 563 0.88 11 20 3.5 4.3e+02 3.3 1.2 1 23 580 602 580 602 0.96 12 20 0.044 5.3 9.3 0.5 1 23 631 654 631 655 0.94 13 20 0.0019 0.23 13.6 3.5 3 23 664 685 662 685 0.95 14 20 1.6 2e+02 4.3 2.0 2 23 722 744 722 744 0.94 15 20 0.00028 0.035 16.2 1.0 1 23 758 780 758 780 0.98 16 20 2.4e-05 0.0029 19.5 1.3 1 23 786 808 786 808 0.98 17 20 6.6e-06 0.00081 21.3 1.0 1 23 814 836 814 836 0.98 18 20 9.3e-05 0.011 17.7 6.5 1 23 841 863 841 863 0.98 19 20 0.0001 0.013 17.5 1.2 2 23 870 891 869 891 0.97 20 20 0.005 0.62 12.2 0.9 1 23 897 920 897 920 0.95
Sequence Information
- Coding Sequence
- ATGGCAGCAACTACGACATTGAACTCAAAAAATCCCATCAATTCATTACCATCGAAGGCTGCAGAGATTTACCGGGAAGAAACTGGTGACATTTACTATGTGTGCTTCCACTGCGGATATAACTCGTCGAGTGTTACTGATATGCTGACTCACATAGAGGTTCACTTCTCTTGCAAAAATGACATTTACGAAGCGTTGCACTGTGTCGATGTTAAGTCTGAACCTACGGAGCAAGAACCGGAATATGTTATTAAACAACTTGAACAGATATTTACTGACTGCAGCACTAAGACTATAGAAAATTCCTTCCCAGCTGACGAAACAAACCACCTCATCTTACCAGATCAACCGGCATTATCGGATGTTATTGATGGCTTTGCGGATCTGCAAGGACTCTTCGAATGGAAATGTTTGCTTTGTAATATTTTGTTTAAGAAGAGCACGAAACTGAAGCAGCATTTAATAAAGCACAGCAGTGATCCAATGAAGCGAGTGATTGATGAGAAGAAAAAAGAGATGAAAGCGCTCTATTCATTTAAGTGTACGTTATGTTCGTTGGAATTTTATGATGCAACCGCATCCGAACAGCATTTGGAAGATGCTCATCGAGCCGTTCCGCCGCTGATCAAATGTATTCCTTGCAGTATTGAGTTTGTTTCAGCTACATTTTTGAAAGAACACATGACGGTCGCTCATAGTAAACAGGAGAGGAGTGCCATTGAAGATACGTCAAGCGAGTCATGTGGACGTTACGAAATGCCAGCTGCAGCAAGGTACGAGAAGTGCTTTTGTACAATTTGTCGTAAAACATTGATCGGAACATTTCGATTTATGCAGCACACGTTCACTCATTTCGATCTGAAAATGTTTTGCTGTCCGAAATGTCCATCGAATTTCACTCGAATGGACACATTCAATAAGCACATGAGATCGAAACATTCTCAGAAGCCTGAGTACGCATTCATTTGTAGATTTTGTGAGGACACCTTCGACCATTCGAATTTATTTAGTTTTGTTACGCACGCCTTTGAACATCATCTGGATGACGGAGACCGCAACAATTCCGGTTTGAATGAAACATTTAATTACAGTTGCCGGTTTTGTTACAAAGGCTTTGACAGATGGATCGACGCGTCTACGCATTTGTCACAACATGCCGATGACGAATTGCCGAAAGGGCTTCCATGCAACAGTGATCGGCTCTTTTCGGAACGATGTTCGAGTGGAGCGTACCGTTCTGAATTTCTTTACAACTGTTCGATTTGTACGAGCACATTATGTGGATCGTACGAAGCAAGAAAGCATTTGATTGAGAAGCATCAAATCGCCGATCATGTTACTGTTAAGAGGTGCACAATGGATCATAAACTTTTTTCCGCTCCATTGCAATATCGTGTAATATCTGCAAAATCCAATGAACCAATCAAAAAGAAAACCAATAAATGCAACGACTGTGACAGCATTTTCGAAACGGAGATTGACTTGATGAGGCACCGGCTGCAGCACTTTAATGTGCAACCATATTTCTGTCCTAACTGCTCCATGTCATTCAGTTCACGTGAACAAGTTAGTCGACATTTACTTAAAAAACACGGACTAGAACTTTCATACGAACAACTGATTTGCAAATTTTGTGGATGCGAATTTTCCGACGACGATGAATTTATTGTACACAATTTCTCGGATCATTTGTACATAAATTTCGACGCTGATGACGATTTGGACGATCTGTGCAAATACGAATGCAGGTACTGCAGTGAAATTTTAGACGAACGACGTTTGATGGACCagcatttacatacacacacAAACGATAACATTACTGAAGTAGTAGACGCAGAGGCTGAGGATTGTTCAATTAATAAACTACGCCATAACGATGAGTTTCTATACGTTTGCCTGCAATgtccgaaaaaatttcgactTCCCTATGTAGTGAAAGAACACGCTAAGGTTGTCCATCATGACAAGCCGAAGAAAGAAAGCCACTGCGATTTATGTGacataacatttttttcgtgGCACTCGTTACGAAATCATCAGTCAAAAGTACACTCTGGATTAGAAAAAAAGCCGGTCACATCCAAAAACAATGTCAACGAGATCGTTCGAAAAGTGCAAGTGAGCCCGAGAAAAAAAGGAAGGAAAAAGTTAGAAGGCAATCGCTGTGACATATGCAACAATACATTTTTGAGCAATCGATCCATGATCAATCACCGAACGAAACGGCATCCAGAAACTGTTGACAATTCTTTGAAACATCAACATTCTTACACTTGTGCAGAGTGTGGAAAGACCATTGCGGATATAAGCAACTTTCATAAACACAGAGAAACTCACGAAAAGCGTCACTCGTTCACATGTGATATCTGTAGCAAAACGTATCGGTTGAAGAATTCCTTGCAGACGCATATGCTCATTCACACCGAAGAGAAGAACTTTGTTTGTGAGGAGTGCGGAAAATCATTTTACACCACAAGCAAACTCAATTTGCATAAACAAGTGCACGAGAATTTAACGTTTCACTGTGACAAATGTGGTAAAGTTTTTTACACCAGAAACAATTTCAGTAAACACAAGAAGACCCATCTGGATAATGCACGCAAGAAGTGTACAATGTGCGACAATACGTTCAAATCGTCTGTTTCCCTTCGAATTCACATGTTGCTACATGAACGCGAGAAAAAGTATACCTGCAGATATTGCGATATGACTTTCGCTCAATCATCGGGGCGCCGAGGTCACGAAAAAGTTAAGCATGACATCGCTTAA
- Protein Sequence
- MAATTTLNSKNPINSLPSKAAEIYREETGDIYYVCFHCGYNSSSVTDMLTHIEVHFSCKNDIYEALHCVDVKSEPTEQEPEYVIKQLEQIFTDCSTKTIENSFPADETNHLILPDQPALSDVIDGFADLQGLFEWKCLLCNILFKKSTKLKQHLIKHSSDPMKRVIDEKKKEMKALYSFKCTLCSLEFYDATASEQHLEDAHRAVPPLIKCIPCSIEFVSATFLKEHMTVAHSKQERSAIEDTSSESCGRYEMPAAARYEKCFCTICRKTLIGTFRFMQHTFTHFDLKMFCCPKCPSNFTRMDTFNKHMRSKHSQKPEYAFICRFCEDTFDHSNLFSFVTHAFEHHLDDGDRNNSGLNETFNYSCRFCYKGFDRWIDASTHLSQHADDELPKGLPCNSDRLFSERCSSGAYRSEFLYNCSICTSTLCGSYEARKHLIEKHQIADHVTVKRCTMDHKLFSAPLQYRVISAKSNEPIKKKTNKCNDCDSIFETEIDLMRHRLQHFNVQPYFCPNCSMSFSSREQVSRHLLKKHGLELSYEQLICKFCGCEFSDDDEFIVHNFSDHLYINFDADDDLDDLCKYECRYCSEILDERRLMDQHLHTHTNDNITEVVDAEAEDCSINKLRHNDEFLYVCLQCPKKFRLPYVVKEHAKVVHHDKPKKESHCDLCDITFFSWHSLRNHQSKVHSGLEKKPVTSKNNVNEIVRKVQVSPRKKGRKKLEGNRCDICNNTFLSNRSMINHRTKRHPETVDNSLKHQHSYTCAECGKTIADISNFHKHRETHEKRHSFTCDICSKTYRLKNSLQTHMLIHTEEKNFVCEECGKSFYTTSKLNLHKQVHENLTFHCDKCGKVFYTRNNFSKHKKTHLDNARKKCTMCDNTFKSSVSLRIHMLLHEREKKYTCRYCDMTFAQSSGRRGHEKVKHDIA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -