Phyg019493.1
Basic Information
- Insect
- Pseudolycoriella hygida
- Gene Symbol
- -
- Assembly
- GCA_029228625.1
- Location
- CM055404.1:44899501-44902074[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.009 1.1 11.4 0.5 1 23 30 52 30 52 0.96 2 18 0.071 8.7 8.6 4.6 2 23 137 158 136 158 0.97 3 18 1.2 1.5e+02 4.7 1.2 2 23 186 208 185 208 0.93 4 18 0.062 7.5 8.8 0.0 6 23 218 236 217 236 0.97 5 18 0.25 31 6.9 0.6 5 23 275 293 271 293 0.90 6 18 0.0075 0.92 11.7 0.3 1 23 299 322 299 322 0.96 7 18 0.054 6.6 9.0 1.3 1 23 373 395 373 395 0.97 8 18 4.5e-05 0.0056 18.7 1.1 1 23 463 485 463 485 0.98 9 18 0.0092 1.1 11.4 1.3 1 23 491 514 491 515 0.97 10 18 0.024 2.9 10.1 1.0 2 23 526 548 525 548 0.91 11 18 0.2 25 7.2 0.8 1 23 565 587 565 587 0.98 12 18 0.029 3.6 9.8 1.2 2 23 655 677 654 677 0.94 13 18 3.2e-05 0.0039 19.1 0.5 1 23 692 714 692 714 0.98 14 18 3.2e-06 0.0004 22.3 3.0 1 23 720 742 720 742 0.98 15 18 3.2e-05 0.0039 19.2 2.3 1 23 748 770 748 770 0.97 16 18 3.6e-06 0.00044 22.1 2.7 2 23 776 797 775 797 0.97 17 18 0.00059 0.072 15.2 2.8 2 23 804 825 803 825 0.97 18 18 0.02 2.4 10.3 1.4 1 23 831 854 831 855 0.94
Sequence Information
- Coding Sequence
- ATGTCAACAATTCCTACAACATTTTCGCAAAGCGAAGCGGCATCTAAAGCTGCAGAAATTTATCGGAGAGACTCCGGTCAAATTTATTATGTCTGCTTTCATTGCGGAGCTAATTTCAGTAGTATAAGTGAGACACTTACTCACATTGAATTACACTTTAATGCTACGAATCACATCAAAGAGGAACCCGAGACGTTGGACATTGTTGATATAAAATGTGAAATCGTGGACAATGTTTCACAGGAAACGGATTTAGAGCAAATATTTATCGATTGCAACAAGTCTCTGTCGCAAAACGAAGAACAATGTTTGCGAATTGACACAACGAACTACTCACTTCTACCCGTTCAACAAACGGTAACAATACCGAAAGGCAGCCTCACTGACGTCGAAGATCATTTCGAATTGAAATGTCTGTATTGCTCGAAACTGTGCAAAACATTTGTTACGCTGAAGTTGCATTTACGGAGGCATGTTAAAGAGCCATTGCCTAATATTGTGTTGGAAGCAATGGCAAGGGATCAGACTCTGAAGCCAAGGCCTTTATATTCACTCAAGTGCACTTTGTGTCCATCGGAATTTTACGATTCAGATGCGTGTCGCCAACATGTGAGAGACAACCATGATCCCGAACCAATCAAATGTATTCCATGTGGCAGAATATTTGTTTCCACACAATTGTTGAAAGATCACATGATATCAGCTCATATTACTCCAGACCTTTCACACACGAATCAGACGAATACGGCCAACGCAAGTGAGAACGATCCGCAAACCAGTAAGAACACCATGCTGACACAGTACAACACATTTTTGTGCATCTTATGCGATAAGACCTTTAACGGAACGTTGAATCTGATGCAACATACATTCGTccatttcaatttgaaaaattttagttgTCCACAATGTCCAGCGGCATTTCAACGCATGTCTACCATCAATGAGCACATGACGAAAAAACATTCTGTGAACGTTGACAAACAGATCTTTAACATTCAATGTCGattttgcagcgaaaaaatcgacaattttttcgattttgtcaCACACACTTTCACCAATCATTTGGACGAAGGGGATCGTAACAATTCGGATTTGGATCCGACGTTCTGTTACGACTGtcgattttgttttaaaaaattcgaTAAATGGAATGAGGCTTTTGTACACTTAAAGGTACATGCAAACGACCAGCTTGTAAAATGTACTACGTCCACGGCCCGGAATTTATCGGAACGAGCCAAAAGCGGTCTCTACCGATACGAATTGCTTTACAATtgcaaattttgcatgaaaacgCTGTGTGGATCTTTCGAAGCGAGGAACCATCTCAAGACTGATTGTGAGCATGTGCCCGATCTGAAAATGATAGAGAAAAAGGGCTTCAAGTGTCAAGACTGTGACGGCTCCTTTTCTTCGGAATTTTCTCTCATGAGACATCGGTTAATGCATTTCAAAGTGATGCCATACAGATGTATGATTTGCGCAAAACAATTCAGTGTCAGACGGAATGCAACTCTTCATATGATCAAGATTCATCACATGCAACCAAATGACAATTTCAGTCAACTTGAATGCCACTATTGCAAGGCTGAATTTAAGGAGGAAACAGACTTCATAACACACATGTTCGATGAGCATTTGTACGTTaatttcgacattgaggaaaaCTTAGACGGGGAATTCAGATACGAATGTTTGTACTGCAACGAATATCTGTCAGAACGTAGCCGAATGACCGAACATTTGCTGAAGCATGCAGGCGAAACAATTATCAATGTCGTCTCCACCGAATCGCCAATAAACGCATTGCGACATAATGTGGAATTTCTGTATTGTTGCGTGTTTTGTCCGAAAAAGTTTCGTCTTCCTCACCCAGCCAACGAACATTCCAAGTACAAACACAGAACCGAAAAAACGAGCAAAGAGAAAGTAGAGAATAAATCGACAAGGGACACTTATTGCAACCTTTGTAACATAACATTTATGACTTCGCGTTCAATGGCCAATCATCGGGCGAAACGACATCCAGAAACGCACAACAAAAATCGATACAAAAATCGTCCCACCTACTATTGTTCAACGTGCGGAAAAGCGTACCAAGACCGGGGTAATTTAAATCAACACGAAGAGACTCATGCACGCCTTCAATCATTTACTTGTGACATTTGCAAAAAAACGTATCGCACGAAGAATTACCTTCAAACCCATATGCTGAGTCAcacaaatgaaaagaatttcATTTGCGAACATTGTGGTAGATCGTTTTACAGCGTCAGTAAGCTCAATACACATTATCAAATTCACCAGAATCTAAAACTGCAATGCGACCAGTGCGATAAGGTTTTCTTCACACGCTACAATTTGAGCAAACACAGAAAGACGCACAGTACGGACACACGGAAAAAATGCAAGTTATGCGACAAGTATTTCAAGTCAACCGAATCTTATCGTACGCACATGCTGTTACACACTGGGGTCAAAAAATACGCTTGCCGTTATTGCGATATGACCTTTGCTCAATCATCCGGTCGTAGAGGTCACGAGAAAATAAGACACCATATTGCTTAG
- Protein Sequence
- MSTIPTTFSQSEAASKAAEIYRRDSGQIYYVCFHCGANFSSISETLTHIELHFNATNHIKEEPETLDIVDIKCEIVDNVSQETDLEQIFIDCNKSLSQNEEQCLRIDTTNYSLLPVQQTVTIPKGSLTDVEDHFELKCLYCSKLCKTFVTLKLHLRRHVKEPLPNIVLEAMARDQTLKPRPLYSLKCTLCPSEFYDSDACRQHVRDNHDPEPIKCIPCGRIFVSTQLLKDHMISAHITPDLSHTNQTNTANASENDPQTSKNTMLTQYNTFLCILCDKTFNGTLNLMQHTFVHFNLKNFSCPQCPAAFQRMSTINEHMTKKHSVNVDKQIFNIQCRFCSEKIDNFFDFVTHTFTNHLDEGDRNNSDLDPTFCYDCRFCFKKFDKWNEAFVHLKVHANDQLVKCTTSTARNLSERAKSGLYRYELLYNCKFCMKTLCGSFEARNHLKTDCEHVPDLKMIEKKGFKCQDCDGSFSSEFSLMRHRLMHFKVMPYRCMICAKQFSVRRNATLHMIKIHHMQPNDNFSQLECHYCKAEFKEETDFITHMFDEHLYVNFDIEENLDGEFRYECLYCNEYLSERSRMTEHLLKHAGETIINVVSTESPINALRHNVEFLYCCVFCPKKFRLPHPANEHSKYKHRTEKTSKEKVENKSTRDTYCNLCNITFMTSRSMANHRAKRHPETHNKNRYKNRPTYYCSTCGKAYQDRGNLNQHEETHARLQSFTCDICKKTYRTKNYLQTHMLSHTNEKNFICEHCGRSFYSVSKLNTHYQIHQNLKLQCDQCDKVFFTRYNLSKHRKTHSTDTRKKCKLCDKYFKSTESYRTHMLLHTGVKKYACRYCDMTFAQSSGRRGHEKIRHHIA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -