Phyg028787.1
Basic Information
- Insect
- Pseudolycoriella hygida
- Gene Symbol
- -
- Assembly
- GCA_029228625.1
- Location
- CM055404.1:142981469-142983652[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.073 8.9 8.6 0.3 1 23 30 53 30 53 0.93 2 14 0.00054 0.066 15.3 0.4 1 23 117 140 117 140 0.95 3 14 0.0022 0.27 13.4 1.1 2 23 147 168 146 168 0.96 4 14 0.00078 0.095 14.8 0.9 1 23 240 262 240 262 0.99 5 14 0.0031 0.38 12.9 1.2 2 23 272 294 271 295 0.94 6 14 8.5 1e+03 2.1 4.1 1 14 300 313 300 324 0.81 7 14 0.012 1.4 11.1 0.3 2 23 355 377 354 377 0.96 8 14 0.00087 0.11 14.6 1.7 2 23 386 407 385 407 0.96 9 14 0.061 7.5 8.8 0.2 2 23 489 509 488 509 0.95 10 14 3.2e-05 0.0039 19.1 1.3 1 23 515 537 515 537 0.98 11 14 1.2e-05 0.0015 20.5 1.0 1 23 543 565 543 565 0.98 12 14 2.8e-06 0.00034 22.5 1.0 1 23 570 592 570 592 0.98 13 14 1.4e-06 0.00017 23.4 2.6 1 23 598 620 598 620 0.98 14 14 0.53 65 5.8 0.5 1 19 625 643 625 645 0.88
Sequence Information
- Coding Sequence
- ATGGGAGAAAAGGAATTCGAGATGATGGCTTTCAAAGACATGGATAAGTGTGCTATAGTTTATCGAAGCTCTTCGGTTGCATATTTGTACGTTTGCTACCATTGTGGAGCTGATTTCACTAGCATTGACGGCACATTGGAGCACATTGAGTCTCGCCACAAGTACAATCAGGTGGTGGCAATTGTTGAAAATAACGTTAAAGCCGAATGCGATGACTTCGACGATTCAACAAATTTTGAGTCGGACAACATTTTCGATGCGGCAGATGCAACCGATACGGAAGTCGATATCAAAGCAGAGACCATGGAAATTGACAAAGACGATGAACAGGATGAAAAACCGATCTCTTTCGATTGTGAACTATGCGGCAATGAGTTCCCATCAAAATTTACCCTTAAAAGTCACATGGTTCGTGATCACTTGAAACAATCGGCGCTAGAATGTCAAAAATGTGGTAAGAAACTGAAACGTATTGTGGCGTTTAGGAACCACTTGAAACAACATATGGAAAGAGGTGAAGTCGATTGGACTTGCGAGGGAGACGGAATAGCAATGTATGAGCCCAATAACTCGGTCGTTGATGACGAATGTCCGGACGAAAATTTACCTTCAGTTGCTCCGAAAGAAGCTAAGGCCAAGCCAAAAAAGCAACCGAAAAagaagttgaaaaaattgacaaaagtGGAAAGCAAAAAAGCTAAAAAACGAACGCAGAACTTTACCTGCCACAAATGCTCCGAGACATTCGGCGCGATAGACGATCTGAACGATCACCTAAACACACATCCGACAGACGACATACAGCAAATAAACAAATGTAAAGAatgcaaaacatattttccgaCTGCTTTCGACCTCCGTGTGCATGTACTCAACATTCATCATTCACTTGAAACATTCAAATGCTCGACGTGTTCGATGAAATTCAAGAAGAATGAAAAACCATTGCTCGAGGAGCATTTAAGTTCGCATgcggaaaattggaaaaacaaTCGAAATAGCATTAGCGATGAAGGAAAGGACACGGTGAGCTTTGAAGAAATCATCACCGACTCGGAATCAACTTGTGTATTGTGTGaagaaaagttttacctcaGCTCCAACTTGGATGAGCACACCCGAAGTGTTCACTCGGAAGTTGAAGACAAAAAGCTAAGGTGCCCACAGTGTGAATGTGTCTTCAGCAGCAACAAGTCTTACTTCGCCCATCAACTTGAACATCGCCGGGTGGGACCAACTGTCACCGAAACCAACATGAAACTTTTGATCAACAACTTAAGCACATACATCAACGAGCAGTACGCTTTCAATGACGCGGACGATACTGCCAACCCATACAAATGTATGATTTGCTTTGCCCAAAAGGACAGCAGTTTGGAAATCCGGCAGCATGTTCGACAACGACACGTTTACAAAATGTTGCCGCAGCCCATTCACGTTAAATCCAATGTAAAAGAACGCATTTCGTGCAATATTTGTGGCGTGGGCATCACACGGAACAGCTTCAACAATCATATGAAAATTCACACCGACACCAAAAAGTTTCCGTGTTCCATCTGCGGTAGAGTGTTTAGTAAAAATTATTCCAAGAAAACCCACGAACGAATGCATACTGGGGAGAAACCGTACCAGTGCGATCAGTGTGGCAAAAGATTCTTTAACTCATCTCTACTGGGTGCACATAAACAGTCTCACGACAGTCGCACTTATCCCTGCAAAATATGCGGACGCTCGTTCAATATTTCGTCCACATATCGTCGACACGTTCAGACTCATCGCAAGGATCAATCATTCGAATGTACCATTTGCTTTAAATCGTTCAACACTCGCCCTTATTTGACGAGACACATGAACAAACACAAGGGAAAAACGTTCGAATGCTCGTTCTGCGGTAGTAAATTCAACACAGCGAACGGCAAGCGCATCCACGAGAAGTGCGTCCATTACCATGAaccgaaaatttaa
- Protein Sequence
- MGEKEFEMMAFKDMDKCAIVYRSSSVAYLYVCYHCGADFTSIDGTLEHIESRHKYNQVVAIVENNVKAECDDFDDSTNFESDNIFDAADATDTEVDIKAETMEIDKDDEQDEKPISFDCELCGNEFPSKFTLKSHMVRDHLKQSALECQKCGKKLKRIVAFRNHLKQHMERGEVDWTCEGDGIAMYEPNNSVVDDECPDENLPSVAPKEAKAKPKKQPKKKLKKLTKVESKKAKKRTQNFTCHKCSETFGAIDDLNDHLNTHPTDDIQQINKCKECKTYFPTAFDLRVHVLNIHHSLETFKCSTCSMKFKKNEKPLLEEHLSSHAENWKNNRNSISDEGKDTVSFEEIITDSESTCVLCEEKFYLSSNLDEHTRSVHSEVEDKKLRCPQCECVFSSNKSYFAHQLEHRRVGPTVTETNMKLLINNLSTYINEQYAFNDADDTANPYKCMICFAQKDSSLEIRQHVRQRHVYKMLPQPIHVKSNVKERISCNICGVGITRNSFNNHMKIHTDTKKFPCSICGRVFSKNYSKKTHERMHTGEKPYQCDQCGKRFFNSSLLGAHKQSHDSRTYPCKICGRSFNISSTYRRHVQTHRKDQSFECTICFKSFNTRPYLTRHMNKHKGKTFECSFCGSKFNTANGKRIHEKCVHYHEPKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -