Phyg035875.1
Basic Information
- Insect
- Pseudolycoriella hygida
- Gene Symbol
- -
- Assembly
- GCA_029228625.1
- Location
- CM055406.1:21841210-21843032[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.09 11 8.3 0.4 2 23 92 113 92 113 0.93 2 10 0.53 65 5.9 0.5 2 20 118 136 117 138 0.91 3 10 5.6e-05 0.0069 18.4 3.2 1 23 142 164 142 164 0.98 4 10 2.9e-06 0.00036 22.4 1.8 1 23 185 207 185 207 0.99 5 10 0.00018 0.022 16.8 1.0 2 23 214 235 213 235 0.97 6 10 2.4e-07 2.9e-05 25.8 1.4 1 23 241 263 241 263 0.98 7 10 0.00044 0.054 15.5 0.5 1 23 269 291 269 291 0.98 8 10 3.5e-05 0.0043 19.0 1.0 1 23 294 316 294 316 0.98 9 10 5.2e-07 6.4e-05 24.8 0.9 2 23 323 344 322 344 0.97 10 10 0.0014 0.17 14.0 0.0 1 23 350 372 350 372 0.98
Sequence Information
- Coding Sequence
- ATGGAAGAATTTAGTTACATTCAATCGCCTGAGCATGTTATAATTAAAGatgaaattgacgaaattgattCGAATGCGTACCAGTTGCCCAAATTGGATGAAATTATACCTAAAATTGACCATGATATTGAAATAATAAAAGAGGAGGATGTGTTGCGTGAAACAGAATTGAATCAACAAGTAGTTTACGAACATGACGGTTTTAAACTGACAAGAACGTCTCTTCGAAACAAGGAACACATTAAGATTAGCTCATTGCACTATCCAGATAATTATTGCAGTTTGTGTAAAATTCCATTCCAAACGTCGGAACAATTTGCTTTGCACAAGTCTGGCCACGAGAACAATCTAAAATGTAGTCTATGCACAACAGTTCTGAAATCGTTTAAGAATTACGACAAACATGTCGCAAAGTGTAAGCCGCACAAGTGTAATGTTTGCCAGAAAGTCATTCGATTTCGCCCGAATTTCATTAAGCACATGAGAACGCATAAACCCAAAAATACGAATGAGGAGCATGGACTCAAAGTGCCCAAATCTGAACGACTCAAATACAAATGTTCAACATGTGAAAAGGAGTTTACAAGTTGGGAATATTTTAAAGTCCATCAAAAGATTCATTCagagaatttaaatttaaaatgtgACATTTGTGATAAAACTTTCAGTGCTTTAGCTTGCTTGCGAGGTCATTATAAAGTGCACAATGGAGAAAAACCATTCAAGTGCGATGTGTGTGGTAAAAAATTCGGCCAATCGTACAATTTAAAAATCCATTATCGACTTCACTCCGGTTTAAAGCCATTCGAATGCCAAATTTGTGGTCTTCGCGTGAACACAACCGCCAGCTTCAATGCTCATAAAAAAACGCACAAAGATTTTAAGTGCGAAATTTGTAACGAGACATTCAATCAGAAAATCAAGTACATGTCTCACATGGGAATGCATGAAACggGAAAGGTGTTGGAGTGCAATGTATGTGGCAAGAAATTTGGTCGATCGTCAAACTTTTACAATCATCAGCGTATCCACCTGCGCATCATCAAATTCAAGTGCTACATCTGTGGCGATGGCTTTGTTAAGGCTGCAAATTTGGATGCTCACTTGTTGGTACATTGTGATAACGAAACGGGTGAAgcaaatcaagaaaaaaatgcTGAAGGTCAAGCGGTACATCCAGATGCCGAAAACTTCGGAAAGAATGAGATATGA
- Protein Sequence
- MEEFSYIQSPEHVIIKDEIDEIDSNAYQLPKLDEIIPKIDHDIEIIKEEDVLRETELNQQVVYEHDGFKLTRTSLRNKEHIKISSLHYPDNYCSLCKIPFQTSEQFALHKSGHENNLKCSLCTTVLKSFKNYDKHVAKCKPHKCNVCQKVIRFRPNFIKHMRTHKPKNTNEEHGLKVPKSERLKYKCSTCEKEFTSWEYFKVHQKIHSENLNLKCDICDKTFSALACLRGHYKVHNGEKPFKCDVCGKKFGQSYNLKIHYRLHSGLKPFECQICGLRVNTTASFNAHKKTHKDFKCEICNETFNQKIKYMSHMGMHETGKVLECNVCGKKFGRSSNFYNHQRIHLRIIKFKCYICGDGFVKAANLDAHLLVHCDNETGEANQEKNAEGQAVHPDAENFGKNEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00245689;
- 90% Identity
- -
- 80% Identity
- -