Phyg048749.1
Basic Information
- Insect
- Pseudolycoriella hygida
- Gene Symbol
- -
- Assembly
- GCA_029228625.1
- Location
- WJQU01002671.1:4909-7054[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 6.8e-05 0.0083 18.1 2.8 1 23 218 241 218 241 0.96 2 14 0.0032 0.39 12.9 1.8 2 23 264 285 263 285 0.95 3 14 4.7e-05 0.0057 18.6 1.4 1 20 289 308 289 311 0.92 4 14 9.7e-06 0.0012 20.8 0.5 1 23 317 339 317 339 0.96 5 14 0.00013 0.016 17.3 0.4 1 23 345 368 345 368 0.95 6 14 0.00011 0.013 17.5 3.4 3 23 376 396 375 397 0.96 7 14 9.9e-06 0.0012 20.7 1.3 1 23 403 426 403 426 0.98 8 14 0.0008 0.098 14.7 1.2 1 23 432 455 432 455 0.94 9 14 0.13 16 7.8 1.8 2 23 466 488 465 488 0.96 10 14 0.0042 0.51 12.5 1.0 1 23 494 517 494 517 0.96 11 14 1.9e-05 0.0023 19.8 0.7 1 23 525 547 525 547 0.98 12 14 1 1.3e+02 4.9 0.1 2 23 555 577 554 577 0.95 13 14 0.056 6.9 8.9 0.7 1 21 583 603 583 606 0.81 14 14 2.9e-05 0.0036 19.3 4.3 3 23 612 633 611 633 0.97
Sequence Information
- Coding Sequence
- ATGCCATCGAAAGAAATTGCCCGACAAAATCGCATTTGTATAGTTCCTGTGTGTAACGCCAAAAATTCCGATTTTCCCGACCGAATATTTTTTGCTGTGCCTgaaagtaaaaagaaaaattggctGGAAATCGTCGGTGGTGATTCCAGCTGCATTAAGCCAAAGAAACGATTGTTTTGTTGtgaaaaccatttcgacGTGAAGAGAGATGTGGAGGGCTACGATTTTTATAAGCATTTCGGTGGTAGGATTAAGCTGTTGGAAAATGCATTTCCATCGAAACATTTAGGCGAAGAAAATGAGTTCCCAAAAGTCGAAGAAATTTTACCGAAAGAAGAGCCTTGTGAGGATCCATATGATGAGTCCATTGACCCATTATCCATTTCTGAGGACAAATGTGTTGGAAGTGAAAATGGTATTGTCAAATCAAATGCGGAAGACATTGACATCAAAGTTGAATCTATTGACCCAGACTGGCGTCCTGAAGCAACGAGTCCGTTACATAACGTTAAAAGTGAAGAGGACAATGTGACGTACGAAACGAACGATCGGGACGAAAGCGACAGTGAAGAAATGAAAGATGACTTGCAGCCCGATCAATTTGTGGAGGAGATGAAGGACACTCCTGGAGATGATTCCAAAAATATCACATACGACTGCAAGAAATGTGGCAAAAACTTATCCTCATCGCGGTCATTGAAACGTCATACGCAATCCTTCCATGGAAACGTTGATGGATCAAAACATCACATGGAGAAGACGAGAAGCGAAAACAGTGAACATGAAATTTCATGTAGCGAATGCAGTAAAACTTTTGGGAATCATGACGACTATCTGAAACACAAGATAAATCATAAGAAAACATTTGAATGCGACGTTTGCGGGAAGGTATTTCGAACGAGATTGCATTTGAAAGTCCATTTTCCTACGCACATGGTAGTAAAACCTTATTTGTGTGAAATATGTTCTCGTCCATTTGCTAGAGCGAACAATTTACGGAGGCACAAACTAACTCATGTAACGGAAAAGCGGTTCATCTGTGATGAATGCGGGAAACGTTTTCCGGCTAATTATTTGCTCAGACAGCATAAGGCAAAGTCACACACTGAAGTTGCGAGAGTGCTGTGCTCAAAGTGTTCCAAAACCTTTACGTCGGTGGCGCATTTAAAAGTTCACATAAACGTGCATCACAGTGATGTCAATCCGTACCGATGTGacatttgtaaaataaaattcagtcaACCGTCCGCCCTGTTGACACATCGAAAGAAGTTCCACGATCCAAATAGCAATTTCCATTGCAACAAATGTCCTCGGAAATTTCCTTCACAATTCGAATTAGAAGGGCACACGAAGGCAGCCCATCCCCATCGATCCAAAGAGAAAACAATCAACAAATGCGACGAATGTAACATAACGCTTCACAGTCCGTATCGACTGAAACTGCATCGATTGAAACTTCACAATCCAGCCAATCCATTCAAATGCGAAACTTGTCGACAAACGTTCCCCACGGAAAATTTAATGAATCAGCACGCTATGCGAACTCACGCTCCGGAACACGAATACATCTACAAGTGTTACATTTGTCCGAAGAAATACAATCAAGAAGCGGCATTGAAGCGCCATGTCAAATTGCACACCGACGCTAAAAAGCCGGTAACTTGTCAACTATGTGAAACTACTCTAGGCCGTCCCAATCGCTTAAAGCCGCATATGCGAGCGCTGCATAATCCGAATTATTTGTTTAAATGTGAAATATGTCAGCAAACGTTTCGTGAACAGAAAATACTGGACAGTCACACTACCCAAGTACATGAACAGTCAATTTTATGTGAATATTGTAACAAATCATTTAGCAAACGACACGGCTTGCGCCGACATTTAAGGCAGTTTCATCCGGCAACCGAGACGAATGAATAG
- Protein Sequence
- MPSKEIARQNRICIVPVCNAKNSDFPDRIFFAVPESKKKNWLEIVGGDSSCIKPKKRLFCCENHFDVKRDVEGYDFYKHFGGRIKLLENAFPSKHLGEENEFPKVEEILPKEEPCEDPYDESIDPLSISEDKCVGSENGIVKSNAEDIDIKVESIDPDWRPEATSPLHNVKSEEDNVTYETNDRDESDSEEMKDDLQPDQFVEEMKDTPGDDSKNITYDCKKCGKNLSSSRSLKRHTQSFHGNVDGSKHHMEKTRSENSEHEISCSECSKTFGNHDDYLKHKINHKKTFECDVCGKVFRTRLHLKVHFPTHMVVKPYLCEICSRPFARANNLRRHKLTHVTEKRFICDECGKRFPANYLLRQHKAKSHTEVARVLCSKCSKTFTSVAHLKVHINVHHSDVNPYRCDICKIKFSQPSALLTHRKKFHDPNSNFHCNKCPRKFPSQFELEGHTKAAHPHRSKEKTINKCDECNITLHSPYRLKLHRLKLHNPANPFKCETCRQTFPTENLMNQHAMRTHAPEHEYIYKCYICPKKYNQEAALKRHVKLHTDAKKPVTCQLCETTLGRPNRLKPHMRALHNPNYLFKCEICQQTFREQKILDSHTTQVHEQSILCEYCNKSFSKRHGLRRHLRQFHPATETNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -