Basic Information

Insect: Pseudolycoriella hygida
Gene Symbol: -
Assembly: GCA_029228625.1
Location: CM055405.1:3484633-3495281[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 5.6e-06 0.00069 21.5 1.5 2 23 133 154 133 154 0.97

2 10 9.5e-07 0.00012 23.9 0.5 1 23 160 182 160 182 0.97

3 10 1.6e-07 1.9e-05 26.4 0.5 1 23 188 210 188 210 0.98

4 10 3.4e-05 0.0041 19.1 0.8 5 23 222 240 216 241 0.91

5 10 6.8e-06 0.00083 21.3 0.6 1 23 246 268 246 268 0.98

6 10 1.4e-05 0.0018 20.2 5.3 1 23 274 297 274 297 0.98

7 10 1.1e-05 0.0013 20.6 7.0 1 23 302 324 302 324 0.99

8 10 2.9e-05 0.0035 19.3 1.9 1 23 329 351 329 351 0.99

9 10 0.0013 0.16 14.1 0.0 3 23 359 382 358 382 0.91

10 10 0.021 2.6 10.2 0.2 1 23 402 427 402 427 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	5.6e-06	0.00069	21.5	1.5	2	23	133	154	133	154	0.97
2	10	9.5e-07	0.00012	23.9	0.5	1	23	160	182	160	182	0.97
3	10	1.6e-07	1.9e-05	26.4	0.5	1	23	188	210	188	210	0.98
4	10	3.4e-05	0.0041	19.1	0.8	5	23	222	240	216	241	0.91
5	10	6.8e-06	0.00083	21.3	0.6	1	23	246	268	246	268	0.98
6	10	1.4e-05	0.0018	20.2	5.3	1	23	274	297	274	297	0.98
7	10	1.1e-05	0.0013	20.6	7.0	1	23	302	324	302	324	0.99
8	10	2.9e-05	0.0035	19.3	1.9	1	23	329	351	329	351	0.99
9	10	0.0013	0.16	14.1	0.0	3	23	359	382	358	382	0.91
10	10	0.021	2.6	10.2	0.2	1	23	402	427	402	427	0.93

Sequence Information

Coding Sequence: ATGGAAAATGTATGCAGCATTTGTTTTGCTGTGACTGAACTTTATCAATTGTCTGGTTTCACATTGCCGATGTGCTTGAAATGTTCAGAACAATTTACATCAAAAGGAATTACCATTAACTCActgaatttttatcaaaatcttCATCAGCCAATCTCAGTCCCAATAACTACTCAAGTAAATAGTATAGCTCCGGCTACCGTACAGCTGAATACTTCATCCACAGTTCAACCGACAAATTTATCTCGAGCTACCGATATGAATACAGACTCGAATCAATCATCGATATCATCTCATGATCAGCCGATTAACATCAAACAAGAGGCGATTGGATTAGCAGAAGAACTGGAAAAATCTTTACAAAACGGCGATAGTGAATTGCAAGGCGAAGAAGGAACTTGTGGTCTGTGTGCCAAAACGTTTTCAAGGAAATCATCTCTTTTGTCTCATATGAGAAACCATTCTGTAGATCGTAAGTTCATTTGTTCGTACTGTCAGAAAGGATTTACGCAAGCCGCAAATCTCAGAAATCATGAAAGAATCCACCGTAACGAGAGGCCATATGTTTGCAATGATTGCGGGAAGGCATTCACTCAAGTTACCAATTTGAACAATCACACAAGGTTGCATACCGGCGAGAGGCCATTCGTTTGTATAGAAGCTAATTGCGGCCGGTCATTCGCGCAGGTAACTAATCTAAACAACCACATGAAAACTCACCACAAAATTCAACAGTATGTCTGCAATCAGTGcccgaaaaaatttactcaGGTTACATCATTAAATCAACATTTACTCGTTCACAGTGGCATTCGCGGCTATTTCTGTCCGCATTGTCCCGATAAAACGTTTAAGCAGCAAAGTCATTTGTCGCAGCACATGAGAAGCCATGGTGTGTACCCGTTCAAGTGCAATCATTGTGATGAAAAGTTTTTCCAAGTTTCCCACTTAACACAACATATGAAAACGCACGAAGAATATAAATTCAAATGCAATGTTTGTTTTAGTGCCTTTAATCAAGAGTCCTTGCtacgaaaacatatgcaaaagcATATTGACGACAGGCACTTATTATGTCCAATTCCTTCGTGTAACGAAATATTCGCCGATAAAGACTTACTAACTAAGCACCTTGAGACGGATCATTCTAAAGTTGATCCATCGCTTCAGCAAGCTCCAGTTAAGCGAGTGCATGCTGGAAAATACAACTGCTACTATGATGGATGCAATGAGTATTTCGACGATGCCGATAAACTTAATGAACATTTGATAAGTACTCATGCATTGCTGCACAAAGATCTGGAAGCTCGAAGTAAAatgaatttaatgtttttggagcaaataaaaaatcaaatgaccGAACAATATGTGGCCTCATTGGGTGCCGCTGTACATCAACCGCATAACAGTATTATAATAGGTAACAAACCTAGACCAATGAACAATGACGGACCACCGATGATGGTAGAATATATAACAGCAAACGGTAAAATCAATGAAACTGATTTTAAGACCATATACTTTTCGCAGGAGAAAAAACCTAAAATTGACGGACAAGTAAGATtaagttaa
Protein Sequence: MENVCSICFAVTELYQLSGFTLPMCLKCSEQFTSKGITINSLNFYQNLHQPISVPITTQVNSIAPATVQLNTSSTVQPTNLSRATDMNTDSNQSSISSHDQPINIKQEAIGLAEELEKSLQNGDSELQGEEGTCGLCAKTFSRKSSLLSHMRNHSVDRKFICSYCQKGFTQAANLRNHERIHRNERPYVCNDCGKAFTQVTNLNNHTRLHTGERPFVCIEANCGRSFAQVTNLNNHMKTHHKIQQYVCNQCPKKFTQVTSLNQHLLVHSGIRGYFCPHCPDKTFKQQSHLSQHMRSHGVYPFKCNHCDEKFFQVSHLTQHMKTHEEYKFKCNVCFSAFNQESLLRKHMQKHIDDRHLLCPIPSCNEIFADKDLLTKHLETDHSKVDPSLQQAPVKRVHAGKYNCYYDGCNEYFDDADKLNEHLISTHALLHKDLEARSKMNLMFLEQIKNQMTEQYVASLGAAVHQPHNSIIIGNKPRPMNNDGPPMMVEYITANGKINETDFKTIYFSQEKKPKIDGQVRLS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00246566;
90% Identity: -
80% Identity: -