Basic Information

Insect: Pseudolycoriella hygida
Gene Symbol: -
Assembly: GCA_029228625.1
Location: WJQU01003668.1:3436-5008[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.7e-05 0.0021 20.0 2.9 1 23 55 78 55 78 0.98

2 14 0.0007 0.086 14.9 0.7 1 23 86 108 86 108 0.97

3 14 4.3e-05 0.0053 18.7 2.0 1 23 112 134 112 134 0.95

4 14 0.0001 0.013 17.5 0.7 1 23 140 162 140 162 0.95

5 14 0.00018 0.021 16.8 1.4 1 23 168 191 168 191 0.94

6 14 0.00033 0.041 15.9 0.2 2 23 198 220 197 220 0.94

7 14 6.2e-05 0.0075 18.2 4.4 1 23 226 249 226 249 0.97

8 14 1.5e-06 0.00019 23.3 1.2 1 23 255 277 255 277 0.97

9 14 0.00042 0.051 15.6 0.6 1 23 303 326 303 326 0.96

10 14 0.027 3.4 9.9 0.7 1 23 332 355 332 355 0.95

11 14 6.2e-05 0.0076 18.2 0.9 1 23 363 385 363 385 0.98

12 14 0.056 6.9 8.9 0.1 2 23 393 415 392 415 0.93

13 14 0.00089 0.11 14.6 1.1 1 23 421 444 421 444 0.94

14 14 5.5e-05 0.0067 18.4 2.4 2 23 449 471 448 471 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.7e-05	0.0021	20.0	2.9	1	23	55	78	55	78	0.98
2	14	0.0007	0.086	14.9	0.7	1	23	86	108	86	108	0.97
3	14	4.3e-05	0.0053	18.7	2.0	1	23	112	134	112	134	0.95
4	14	0.0001	0.013	17.5	0.7	1	23	140	162	140	162	0.95
5	14	0.00018	0.021	16.8	1.4	1	23	168	191	168	191	0.94
6	14	0.00033	0.041	15.9	0.2	2	23	198	220	197	220	0.94
7	14	6.2e-05	0.0075	18.2	4.4	1	23	226	249	226	249	0.97
8	14	1.5e-06	0.00019	23.3	1.2	1	23	255	277	255	277	0.97
9	14	0.00042	0.051	15.6	0.6	1	23	303	326	303	326	0.96
10	14	0.027	3.4	9.9	0.7	1	23	332	355	332	355	0.95
11	14	6.2e-05	0.0076	18.2	0.9	1	23	363	385	363	385	0.98
12	14	0.056	6.9	8.9	0.1	2	23	393	415	392	415	0.93
13	14	0.00089	0.11	14.6	1.1	1	23	421	444	421	444	0.94
14	14	5.5e-05	0.0067	18.4	2.4	2	23	449	471	448	471	0.96

Sequence Information

Coding Sequence: ATGTCTGATGTCTACATACCCGAAGACGATGAGTACAGTGATAGCGACGATATTCCATTGAAGATAACAAGATCTCGAAAAGGTGCCGATTCAGAGCCACCAaggaaaaaagttaaaaagaaaaagtTATCGACAGATGCCGACAGTGCAGAGTCCAGCCAATACAAATGTTCGCAATGTGACAAGAATTTATCGTCATCAAGATCGCTGAAGCGTCACGTTAAAACGTTTCACACCAGTGTGAAAAAGCGTGTTTTTACGTGCAAGGAATGTCAAATTGACTTTGAGGACAGCACCGAGTACACTAAACACAAAGCTGTGCATAAGAAGTTGTACGAATGTAATGTTTGCGAACGCACATTTCGGACTAAATTCCTGCTGAAGTCCCATTATGTGCAACATGTCAAAGAAAAGCCAtttctttgtgaaatttgtTCTCGCCCATTTGCAAgATTGGCTACTTTGCGAAAACACAGATTCACGCATGTCACCGAGAAGACTTTCATTTGTGATACATGCGGAAAAGCGTTTTCTGCAAATTTCTTGCTCAAGCAGCATATCCATCAGTACCATACGAATAATACGACCGTTATGTGCGCGCAATGCTCCAAAACATTTTCGTCAACTGCACTCTTGAACATCCACATCAAAGCGTATCACGATGAGGTCAACCCGTACAATTGTGAAATTTGCAATTTACACTTCAGACATCCGTCTGCTTTGTTGCGTCATCGCAAGCGGTTCCACGATCCCAGAAGCGCGTTTGCATGCTTCATCTGTCCCAAAAAGTTTACAAAGCAGGAGATGTTGGAACGACATCTGAAAACTCATCCGAACAGACCAGACTCACTCGACATCAAGTATAGAATCAAGTCAAAAGCATCCAAACCAGCTGAAAAAAGTGTCTTCAAGTGTATGGAATGTGGAATATCTCTTTGCCGGCCAGATCGTTTGAAAGCTCATCTGGCAAAACTTCATAATCCTGACTACCCGTTCAGATGTCCAACATGTCGGATGACATTCCAAACTGAGTTGCTTATGACCCAACATGCTATGCGTCTGCACGCTCCGGAACACGAATACGTTTTCAAGTGTTACTTATGTCCGAAGAAATACAATCAGGAGGCAGCTTTGAAGCGACACGTAAAATTGCACACTGACCCAAAGAAACCGGTCACCTGTGACCTGTGTGGCAAAACTTTAGGTCGTCCCAACCGATTGAAGCCACATTTGCGAGCTTTGCATAATCCCGACAATCCTtataaatgtgagatttgtctCCAAACATTCCGCGAACAGAAAATGTTGACTAGCCACACCACTCAAGTACATGAGCAGACAATTTCATGTCAGTACTGTAGAAAAACGTTTGGAAGACACGAGGGATTGCAACAACATATTCGAAGAAATCACAGTGTGTACTACGACGACAAAGAGATAAAGGAAGAGGAAAATGTTgaataa
Protein Sequence: MSDVYIPEDDEYSDSDDIPLKITRSRKGADSEPPRKKVKKKKLSTDADSAESSQYKCSQCDKNLSSSRSLKRHVKTFHTSVKKRVFTCKECQIDFEDSTEYTKHKAVHKKLYECNVCERTFRTKFLLKSHYVQHVKEKPFLCEICSRPFARLATLRKHRFTHVTEKTFICDTCGKAFSANFLLKQHIHQYHTNNTTVMCAQCSKTFSSTALLNIHIKAYHDEVNPYNCEICNLHFRHPSALLRHRKRFHDPRSAFACFICPKKFTKQEMLERHLKTHPNRPDSLDIKYRIKSKASKPAEKSVFKCMECGISLCRPDRLKAHLAKLHNPDYPFRCPTCRMTFQTELLMTQHAMRLHAPEHEYVFKCYLCPKKYNQEAALKRHVKLHTDPKKPVTCDLCGKTLGRPNRLKPHLRALHNPDNPYKCEICLQTFREQKMLTSHTTQVHEQTISCQYCRKTFGRHEGLQQHIRRNHSVYYDDKEIKEEENVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -