Phyg016824.1
Basic Information
- Insect
- Pseudolycoriella hygida
- Gene Symbol
- -
- Assembly
- GCA_029228625.1
- Location
- CM055404.1:4530040-4531949[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0015 0.18 13.9 2.9 1 23 134 156 134 156 0.98 2 17 0.00022 0.027 16.5 2.4 1 23 162 184 162 184 0.97 3 17 0.00023 0.028 16.5 1.0 1 23 190 212 190 212 0.97 4 17 0.00021 0.026 16.6 3.1 1 23 218 240 218 240 0.97 5 17 0.0015 0.19 13.8 2.6 1 22 247 268 247 272 0.93 6 17 0.0097 1.2 11.3 0.3 1 23 277 300 277 300 0.96 7 17 0.0047 0.58 12.3 1.4 2 23 307 328 306 328 0.96 8 17 0.00044 0.054 15.6 0.9 1 23 334 356 334 356 0.98 9 17 4.8e-05 0.0059 18.6 3.2 1 23 362 384 362 384 0.98 10 17 0.00027 0.033 16.2 0.2 1 23 390 412 390 412 0.98 11 17 0.0013 0.16 14.1 1.2 1 23 418 440 418 440 0.97 12 17 0.0014 0.18 13.9 0.1 1 23 446 468 446 468 0.96 13 17 0.00017 0.021 16.8 1.8 1 23 474 496 474 496 0.97 14 17 5.4e-05 0.0066 18.4 0.2 1 23 502 524 502 524 0.98 15 17 0.0023 0.28 13.3 2.1 1 23 530 552 530 552 0.97 16 17 0.0017 0.21 13.7 1.0 1 23 563 586 563 586 0.93 17 17 0.00015 0.018 17.0 1.4 2 23 591 613 590 613 0.95
Sequence Information
- Coding Sequence
- ATGTTTGAAATTgagaagaaatttataaaatgcgAACCAATTGAAAACAATGGAACGGAATTGACTGATAAGGAACATATAGAACGCATTGAAGATGCCATCAAGtatgaaattgagtttaaagACGACTGTTTGGAATCCGATTTGGTGAAGGAAGAACCGAATTTCGACGGCCAACCCATCAGTAGTGTCGATGTGGCATCCTTTAACAATAACATTGTTATGACAGCGCAGGTTAAACGTAATCTGCGTAACGGCAaggtttttgaatataatgaTGATAAAGTGGTTGATAACATCACGTTGCAAAAAGGAAAAAGGAAAACTGTTTGTTCCAACAAAAAAACATCGCGATCGAAACGAACGGCTAAGAGAAAAGAAGATTTTAGTGGAATGTCATTCGAATGTTATGTGTGCAAATACACCCTGAAAAATCCGGCACACATTCGCTATCACATGAGGAAGCATACCGGCGAAAGACTTTTCGCTTGCGATCAATGCGGCCGAAAATTTCTACATTCACCCAATTTGAAACGCCATAAACGCATTCACACTGGGGAAAAACCGTTCGCTTGTGAGATGTGTAGCCGTAAATTTGCTTCGAAAAAAAGTCTTAGCGATCACGTGCAACGGCATACCGGCGAAAGACCATTTGCTTGCGATCATTGCGATAAGCGATTTTACTCCAACTTGAGCCTCAGATCGCATACGTTGTCGCATACACACGCAGAAAAACCGTTCGCTTGTAATTTGTGCGATAAAAGGTTTTTGACTTCATCAGCACTGCATAGACACAAGCGCACTAAATACGTGCACGTTCCGAGACCATTCGCATGTGATCTTTGCGAACGAAAGTTCGCGGAAGCAACTGAATTGGATTTACACAAACGTAAGCAACACGACGGTCAAAAGTTGATTCCTTGCGATGAGTGCGGTGTGTATTGCTACGATAAATCTCGCTTGAATTCACACAAGAAAACTCATAGTAACATTAGGCCCTTCTCTTGTGCTAAGTGCGAAAAGAGATTTTTGACCAAAGCGTCGCTGGAACGACATTTATTATCACACGAAGGTGCGAGACCATTTCACTGTGACGAATGTGGACAGAATTTCACAACGAAAACATATTTAGGTCGCCACAAAAGAATTCACACAGGTGAACGTCCGTATGTATGCGATCGGTGTGGATTGAAGTTTACAGCGAACGTGCAATTGATCGATCATAAAAGGATTCATACTGGCGAAAAACCATTCGCTTGTGATGTATGCCAGCGTACATTTTCAACAAGATCGATATTGTACACCCACAAGAAAGTACACAGTGGCCTGAAACCATTTGCTTGTGATCAGTGCGAATGGAAATTTTCAAGCGTACGAGGACTCGAACGACACAAAGCAATCCACACTGGCGAGAAACCTTTCGCTTGTGATTTTTGTGATGataaattttcacgaaaagAAAGTTTGGAACAGCATCGTCGAAAGCACACTGGTGAAAAGCCCTACGCGTGTAATATTTGTGAATGGAAATTCGCCGTGAAACAAAGCTTAGTCATACACCAGCGAAAACATTCCGGTGAGAAGCCATATGCTTGCAAGATATGTAAACGTAGATTTAAAACTAGATTGAGCAATGTACGGCATAAAATGGTTCATCTTAATGAGAGTGAAGCGACGGACCGACCTTTCGAGTGTGACATATGCAACGAAACGTTTTGTGACAAACCGAGCATAGAGGAACACATCTTTCAAAAACACTGTACAGGAACGACATGCGAAATATGCGATCGCACACtttcatcaaaatcaagtcttcTTCGCCACAACAAGAGTTTTCATTCTTAA
- Protein Sequence
- MFEIEKKFIKCEPIENNGTELTDKEHIERIEDAIKYEIEFKDDCLESDLVKEEPNFDGQPISSVDVASFNNNIVMTAQVKRNLRNGKVFEYNDDKVVDNITLQKGKRKTVCSNKKTSRSKRTAKRKEDFSGMSFECYVCKYTLKNPAHIRYHMRKHTGERLFACDQCGRKFLHSPNLKRHKRIHTGEKPFACEMCSRKFASKKSLSDHVQRHTGERPFACDHCDKRFYSNLSLRSHTLSHTHAEKPFACNLCDKRFLTSSALHRHKRTKYVHVPRPFACDLCERKFAEATELDLHKRKQHDGQKLIPCDECGVYCYDKSRLNSHKKTHSNIRPFSCAKCEKRFLTKASLERHLLSHEGARPFHCDECGQNFTTKTYLGRHKRIHTGERPYVCDRCGLKFTANVQLIDHKRIHTGEKPFACDVCQRTFSTRSILYTHKKVHSGLKPFACDQCEWKFSSVRGLERHKAIHTGEKPFACDFCDDKFSRKESLEQHRRKHTGEKPYACNICEWKFAVKQSLVIHQRKHSGEKPYACKICKRRFKTRLSNVRHKMVHLNESEATDRPFECDICNETFCDKPSIEEHIFQKHCTGTTCEICDRTLSSKSSLLRHNKSFHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -