Basic Information

Insect: Pseudolycoriella hygida
Gene Symbol: -
Assembly: GCA_029228625.1
Location: CM055405.1:37418097-37430740[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.013 1.6 11.0 2.1 2 23 151 171 150 171 0.97

2 16 1.8e-05 0.0022 19.9 2.9 1 23 174 196 174 196 0.98

3 16 3.7e-05 0.0045 18.9 1.9 1 23 201 224 201 224 0.97

4 16 7.6e-06 0.00093 21.1 1.2 2 23 256 277 255 277 0.97

5 16 0.083 10 8.4 1.9 1 23 282 304 282 304 0.97

6 16 0.0028 0.34 13.0 1.5 2 23 342 363 341 363 0.94

7 16 0.00022 0.027 16.5 1.0 1 23 448 471 448 471 0.96

8 16 0.00073 0.09 14.9 0.1 2 21 479 498 478 499 0.95

9 16 1.9 2.3e+02 4.1 2.0 1 21 508 528 508 531 0.74

10 16 0.00013 0.016 17.2 1.4 1 23 542 564 542 564 0.97

11 16 2.2e-07 2.7e-05 25.9 3.0 1 23 571 593 571 593 0.98

12 16 1.1e-07 1.3e-05 26.9 1.7 3 23 607 627 605 627 0.96

13 16 2.8e-05 0.0034 19.3 2.8 1 23 633 655 633 655 0.99

14 16 1.4e-06 0.00017 23.4 2.2 3 23 663 683 661 683 0.97

15 16 1.8e-07 2.2e-05 26.2 1.6 1 23 689 711 689 711 0.99

16 16 0.02 2.5 10.3 0.1 1 22 717 738 717 741 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.013	1.6	11.0	2.1	2	23	151	171	150	171	0.97
2	16	1.8e-05	0.0022	19.9	2.9	1	23	174	196	174	196	0.98
3	16	3.7e-05	0.0045	18.9	1.9	1	23	201	224	201	224	0.97
4	16	7.6e-06	0.00093	21.1	1.2	2	23	256	277	255	277	0.97
5	16	0.083	10	8.4	1.9	1	23	282	304	282	304	0.97
6	16	0.0028	0.34	13.0	1.5	2	23	342	363	341	363	0.94
7	16	0.00022	0.027	16.5	1.0	1	23	448	471	448	471	0.96
8	16	0.00073	0.09	14.9	0.1	2	21	479	498	478	499	0.95
9	16	1.9	2.3e+02	4.1	2.0	1	21	508	528	508	531	0.74
10	16	0.00013	0.016	17.2	1.4	1	23	542	564	542	564	0.97
11	16	2.2e-07	2.7e-05	25.9	3.0	1	23	571	593	571	593	0.98
12	16	1.1e-07	1.3e-05	26.9	1.7	3	23	607	627	605	627	0.96
13	16	2.8e-05	0.0034	19.3	2.8	1	23	633	655	633	655	0.99
14	16	1.4e-06	0.00017	23.4	2.2	3	23	663	683	661	683	0.97
15	16	1.8e-07	2.2e-05	26.2	1.6	1	23	689	711	689	711	0.99
16	16	0.02	2.5	10.3	0.1	1	22	717	738	717	741	0.92

Sequence Information

Coding Sequence: ATGTCCGAAGACGAATATGATTTCGACAATGTGTGTCGAACATGTTTATCACACAGCAACGATTTGCAATCGGTTTTTCAATTATGTGCCTCATCAACACTTCCCGTACAATTAAACTCCGTAATTATGTCCATAACGAAAGTAGAGATAAATCTCGATGATGGCATGCCGCAAAAAATATGCAATTTATGCAAAACAGCTGTGCATCAAGCGTATTTGTACAAAATGAAATGCGAAGAAAGCGACTTTAAGCTACGGAAATATTTACGCcggaaatgtcaaaatttgaacATAAAGGAGGAGCTTCAGATCTTCGATCAGAACGATTTGACATTGTCCGATGATCCATTCAATCCAACAATTGAAGTGGATATCAACATACACACAGATTTTCCAGATCATAACATCAAAACGATGTCGAGACAGTGTACAAATGTCGACGACCTTGTAGAATGCACGGTGTGCTCTAAGCACGTCGATTCAAAGACATTGTCCAAACATATGAAAACGCATTCGGAGTTCCGATGCGCAACTTGTGATCGAACATTCGCTAAACAAAATCACTTAAATTTGCATATGCAATCGCACTTGAAAAAAGAGTATCGCTGTGACCAGTgcgatgaaattttttctaaCAAGAAGAGCTTAAAGACGCATGAAACTACGTTTCATCCTGCAGCTAAAGGCAATTCATTGGAAGACGGTCACTCGTCATATGATGTCTCGAAAGAACCAAATCAAACTAAAAAGACTCCACGTCGTTTGGAATGTAAACTGTGTGAGAAAATCTTTACGAAGAAAAGTAGTCTTGAACGCCATGTAAAATCCCATGAGAAGAAAGACTATCAGTGCAATTACTGCGATGATATTTTTGATAATCACAAAATGAGACGCTTGCACATGATTGAGCATGTCCACAAGGGTGACCAAAAACGTGGTCGACCGACTAAGCAAATGCCAAAGCAAATTTCAACTATTTTCGACTCCATTTACCGTTCCGGTCCTAACGGCCAAAAGTATTGTGAGTGCAAGCTGTGCGATAGATCgttcaacaaaatatttgctCTTCAGCAGCATTTGGCTGAACATTTAAGAAGTATTGAATCTTTAGCGGAAATCGATTTCACGCAAAAGCTGGATTTATTCGAGGGACTGAATTTCGATGCGCCCAGCCAAGGGAATGAAACTCTCCTTCAGTTCGTTCATCAACAATTAAGCGTTGGGGAAAATAAACgattttacaaaattatgaGCGACAGTTCAATAGAATTAACTCTATCTGATTCGGAAACGGAAAGCGACTCGGAAATGTGTGACGAGTCGAAAGCAAAATATGAATCCTACGAATGTTCCAAGTGTAACCAAAGTTTCGATAGATCTTGGAAAATTTTCGCGCACATGAGAGACAATCATCCTACCGATGAATTCGATGACAAATGCGCATATTGCAACCGAATGTATCCGAATGCTACACTACTCACCAAACATCTTCGAGCACAATGTGAAAATACTTTGAAGCCGTTTAGCTGCACGTATTGTGGAGTGAAATTTATATGGAAAAGTAATTGTGACTCACACGTGGAAAAATTGCATGCGATGGAGGAGACGAAACCTGAAAAAACGTACGCGTGTGGCATCTGCGAGAAAACATTCTTCCGTGGCGAACATTTGGAGAGGCACAAGAAAATCCACATTCCAactgaaaagaaattttcatgcGATTTGTGTAAAAAGAAATTCAACCGCAAGGACAATCTCAAATCTCATATGCGTGTACATAAGGAGGACAAGGATAAGGAAGATGGTGACAAGCATTTGTGCGTTTACTGTGGTCGATCGTTTTCCaattcatcaaatttaattGTTCATATGCGACGTCACACTGGAGAAAagCCGTACAAATGCGACTTGTGTGATAAAGGTTTCCCACGATCATCCGATCTCCAATGTCATAGACGAACACATACAGGGGAAAAGCCGTGTCTCTGCACAATATGTGGCAAAGGATTCTCGCGGTCAAATAAATTAGTTAGACACATGCGAATACATACCGGCATTCGTCCGTACAAATGTACCTACTGTGATCGTGCATTTACCCAATCTAATGACCTGACACTTCACATACGACGGCATACAGGAGATAAGCCATACGTTTGCGGTATATGCGGGGATAGGTTCATTCAAGGAACAGCTTTGCAAACACATCGTCGTTTACAAGGtcattttgaaaataatcaaccAACGCCATTCTCCAGCATCAGCGTAAACAATCCGAACCGTTACACAAATGCAAACCGAGTAAATCGGATCGGTACGATTTCCCTAAACGTTGATGAATTGATCAAACAGGAGAAAGCATCATCGTCTACCGATGCCGTTCATTCAATGAATGTAGCTTCTTCAAACGCATCACCGGAAATGACTCGATCATCAACTGCAACGTACATACCAAATGGTAGCACATACTTGTCAATGGACGTACAACCAATTTTGGCTATTTCTCATTATCAAGGATACAATTAG
Protein Sequence: MSEDEYDFDNVCRTCLSHSNDLQSVFQLCASSTLPVQLNSVIMSITKVEINLDDGMPQKICNLCKTAVHQAYLYKMKCEESDFKLRKYLRRKCQNLNIKEELQIFDQNDLTLSDDPFNPTIEVDINIHTDFPDHNIKTMSRQCTNVDDLVECTVCSKHVDSKTLSKHMKTHSEFRCATCDRTFAKQNHLNLHMQSHLKKEYRCDQCDEIFSNKKSLKTHETTFHPAAKGNSLEDGHSSYDVSKEPNQTKKTPRRLECKLCEKIFTKKSSLERHVKSHEKKDYQCNYCDDIFDNHKMRRLHMIEHVHKGDQKRGRPTKQMPKQISTIFDSIYRSGPNGQKYCECKLCDRSFNKIFALQQHLAEHLRSIESLAEIDFTQKLDLFEGLNFDAPSQGNETLLQFVHQQLSVGENKRFYKIMSDSSIELTLSDSETESDSEMCDESKAKYESYECSKCNQSFDRSWKIFAHMRDNHPTDEFDDKCAYCNRMYPNATLLTKHLRAQCENTLKPFSCTYCGVKFIWKSNCDSHVEKLHAMEETKPEKTYACGICEKTFFRGEHLERHKKIHIPTEKKFSCDLCKKKFNRKDNLKSHMRVHKEDKDKEDGDKHLCVYCGRSFSNSSNLIVHMRRHTGEKPYKCDLCDKGFPRSSDLQCHRRTHTGEKPCLCTICGKGFSRSNKLVRHMRIHTGIRPYKCTYCDRAFTQSNDLTLHIRRHTGDKPYVCGICGDRFIQGTALQTHRRLQGHFENNQPTPFSSISVNNPNRYTNANRVNRIGTISLNVDELIKQEKASSSTDAVHSMNVASSNASPEMTRSSTATYIPNGSTYLSMDVQPILAISHYQGYN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -