Phyg018652.2
Basic Information
- Insect
- Pseudolycoriella hygida
- Gene Symbol
- -
- Assembly
- GCA_029228625.1
- Location
- CM055404.1:32087372-32100111[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.047 5.8 9.2 0.5 3 23 207 228 205 228 0.95 2 20 0.55 67 5.8 0.9 6 23 237 254 237 254 0.98 3 20 2e-05 0.0025 19.8 0.7 1 23 260 282 260 282 0.97 4 20 0.00029 0.035 16.1 1.4 1 23 290 313 290 313 0.91 5 20 0.00085 0.1 14.7 0.3 2 23 317 339 316 339 0.96 6 20 0.00022 0.027 16.5 0.2 3 23 349 370 348 370 0.95 7 20 0.012 1.5 11.1 0.5 1 23 378 400 378 400 0.98 8 20 0.00016 0.019 17.0 0.2 2 23 406 428 406 428 0.97 9 20 0.0026 0.32 13.1 3.8 1 23 433 455 433 455 0.97 10 20 5.3e-05 0.0065 18.4 6.1 1 23 461 484 461 484 0.98 11 20 0.051 6.3 9.0 0.1 2 23 650 672 649 672 0.95 12 20 4.6 5.7e+02 2.9 1.4 6 23 681 698 681 698 0.98 13 20 0.0003 0.036 16.1 0.4 1 23 704 726 704 726 0.97 14 20 9.3e-05 0.011 17.7 0.7 1 21 734 754 734 757 0.90 15 20 0.00048 0.059 15.4 0.4 2 23 761 783 760 783 0.96 16 20 0.00031 0.038 16.0 0.1 2 23 792 814 792 814 0.94 17 20 0.046 5.7 9.2 1.0 1 23 822 844 822 844 0.98 18 20 0.00021 0.026 16.6 0.6 2 23 850 872 850 872 0.96 19 20 9.5e-05 0.012 17.7 0.2 1 23 877 899 877 899 0.96 20 20 0.0001 0.012 17.6 2.6 1 23 905 928 905 928 0.98
Sequence Information
- Coding Sequence
- atggCTTTGAATGCGACTTGGTTGTGTCGTTTATGTCTCCAACAAAGTAATGATGGGGTGAATCTCTATGACAATTTCCAAGACCGAACAATTGCTTCGATTTTATCACAACATTTTTGGTTCCAGGTCACAAAAGACGATGGATTCTCGGATTGTCTGTGCCAAATTTGTTGGACCAACACGAGACTTTTTCACGTCTTTTACGAAGAAGTCGAAATgttgcaaaggaatttttggaataCTGTTGTGTCAGTCGATATCGATCTCGGTTCCGATTCTATTAAAGAAGAGCGAAGTGGTACTCCGACAAACGCAGAGTTAAAACTCGATTTGAATGTTGTGAAAAGCGAAGAAATACAACAGAAACCTTCATGGCTCAGCCTCGAAATGACCGATGAACGAATCTCCAACCAAaGTGAACATCCGGCGTCCGACACCTTAACGGAAAATGAAAAGGTTGAAGTTACCAATAGGAAGCAAGCGAAGAGTTCCATCAAAGCAACTACTGAGGTTAAAATGAAGAAGATTCCGAAGAGTACACAGAAGCAAAGAAGTGCAAAGTCTCAGTCTCAGACAGAGAACGAAGACTCACAAATACGCGAATTTTTTAGAATGGCATGTGAAATCTGCGGTCATCCTTTCGAAACATTTCGTAAAGCGACTAATCATTACCGTGAAGCTCACAACACGCAAGGCTACTTAATTTGTTGTGGTCGTAAATACACTCGGCGTGGCTGCGCATTAAGGCACATCCAATATCATTTAGATCCAAACTTATTTCGGTGTGATCAATGTGGCAAACAATTCTCCGATGAAAGGTTTTTAAAGGCTCATATTGAAAATCACGAACCACTAAACTTACGCGCATTCAAATGCGACTTATGTCCGAAAAGCTTTACGAGAGAATTTAAGCTGATTAGTCATAAAGAATTTGTACATTGTCCCGTTCAATGCGATGATTGTGGAATGAGTTTTTTGTCGAGATCCAAGTTGTCAACTCACATAAAGAACGCTCACCAACCGAAAGTTGAAACAACTCGAATCTGTGACATATGTGGTAAAAGCTTCGCCAACAAATACGTTATAGAAACGCACATGAAGGCAAAACATTCAGCAAGCGAAACTCCCAAATTCCAATGCGACATCTGCGGCGCTTGGATCAAACACAAGGCGAAGCTTAAAATACACATGGAACGGCATTTAAAGGAAAAAGCTACATGTCCAATTTGCAGCAAGGTGTtgatcaacaaattttctttggaaGATCATATACGTCGCATTCATACCGAAAAAAAGCACCGCTGCACAATATGCAACAAAACGCTAAGGACACATCTAAGCTTGAAAGAACACATGGCGCTTCATACCGGCAAGGATCTGTACAAATGCAGTTATTGCACCAAAACATTCAAATCATCATCGAATATGTATTCGCATAGGAAAAAGAAGCACTTTGCTGAGTGGACACAGGACCGTCTTGGAGTCAGTAGAAACGATGAATTATCGGAATGCCTGTGCCAAATGTGTTGGATCAATACAAAAACGTTTCATCTTTTCTACAAAGCTGTAGAGCTGCTGCAGGAAGGTTATTGGAATTCCATTAAAACAGCTGAAATCAATTTATGTGTGGAAACGGTTAAAGAAGAACCAATTGAGACAGAAATCAATTTCGATTTGAATTTGGTTAAAAGCGAAGAAACGAAAGTGGAAGCAGAAGTGGTTGCTACAGAAGTGATTGAAGAAGGATCAAAGGACATTGCCAGTTGCGAACAAAGGCGTTTTTCCTTGAATGTGGATAAGGTGAAATTTCCTAGTAGAAAGGGAACAGAGAGCGTgtttgaagggaaaaagactaaAAAACCTAAgcaagaaattaaagaaaacaaatACGGGCACAAAATTAATGATGTCGACTTTGACTATCAAGTGCGCGAGTATTTCCACATGAAATGCGACATCTGTGGAGATCCCTTCGAAACGTACCGCAGTGCACAAAAACACTACCGCGCCGCTCACAAAATAGAAGGCTACTTAATTTGCTGTGGGCAGAAATTCCATCGCCGAGGACGTGTGCTGAATCAcatcaaatatcatttaaatcCAGACGAATTTTCTTGTGATCAATGCAGTCGAAAGTTTGCTAATAAAAAAGCATTAGCTTTACATATTGAGAATCATGTACCCCTTAATTCACGTGCATTCAAATGTGATTTATGTCCGAAAAGCTTCCCGAGAGAGACTACACTGATTAGACATAAAGATTTCGTACATTCTCCGGTCAAATGCGTTGAATGTGACATCAGTTACCCGTCAAAGTCAAAACTCTCAACTCACATAAAAAACACTCATCAGCCGAAAGTAACAACAACGCGAGTCTGTGATATATGCGGCAAAGATTTCGCCAACAAATACATTTTACAGGCTCACATGCAGGCAATGCATTCAACAAACGAAAATTCTAAATTCCAGTGCGATATTTGCGGTTCTTGGATCAAACATAAGGGCAAATTGAAAGAACACATGGAAAGGCATTGGGAGGGGACTGCTACATGTTCAATTTGCAGCAAAGTGttgataaacaaattttctttaaaaattcataTGCGGTACGTCCATAACGAAAAGTGGTATCCATGTACAATATGTGACAAAACACTTAGGACGCGCCTCAGCTTGAAGGAACACATGGCGGGTCACACCGGCCAGGATCTGTACGAATGCGCTTATTGCACTAAAACGTTCAAATCATCAGCTAATATGTACTCGCATCGGAAAAAGATGCACCTTGCAGCGTGGACCCAAGACTGTCACAAAAGAAGCGCCATCTTGGAAAAAATACCTAAGACTGAAGAACTAAATATGGCAATAGGCTAA
- Protein Sequence
- MALNATWLCRLCLQQSNDGVNLYDNFQDRTIASILSQHFWFQVTKDDGFSDCLCQICWTNTRLFHVFYEEVEMLQRNFWNTVVSVDIDLGSDSIKEERSGTPTNAELKLDLNVVKSEEIQQKPSWLSLEMTDERISNQSEHPASDTLTENEKVEVTNRKQAKSSIKATTEVKMKKIPKSTQKQRSAKSQSQTENEDSQIREFFRMACEICGHPFETFRKATNHYREAHNTQGYLICCGRKYTRRGCALRHIQYHLDPNLFRCDQCGKQFSDERFLKAHIENHEPLNLRAFKCDLCPKSFTREFKLISHKEFVHCPVQCDDCGMSFLSRSKLSTHIKNAHQPKVETTRICDICGKSFANKYVIETHMKAKHSASETPKFQCDICGAWIKHKAKLKIHMERHLKEKATCPICSKVLINKFSLEDHIRRIHTEKKHRCTICNKTLRTHLSLKEHMALHTGKDLYKCSYCTKTFKSSSNMYSHRKKKHFAEWTQDRLGVSRNDELSECLCQMCWINTKTFHLFYKAVELLQEGYWNSIKTAEINLCVETVKEEPIETEINFDLNLVKSEETKVEAEVVATEVIEEGSKDIASCEQRRFSLNVDKVKFPSRKGTESVFEGKKTKKPKQEIKENKYGHKINDVDFDYQVREYFHMKCDICGDPFETYRSAQKHYRAAHKIEGYLICCGQKFHRRGRVLNHIKYHLNPDEFSCDQCSRKFANKKALALHIENHVPLNSRAFKCDLCPKSFPRETTLIRHKDFVHSPVKCVECDISYPSKSKLSTHIKNTHQPKVTTTRVCDICGKDFANKYILQAHMQAMHSTNENSKFQCDICGSWIKHKGKLKEHMERHWEGTATCSICSKVLINKFSLKIHMRYVHNEKWYPCTICDKTLRTRLSLKEHMAGHTGQDLYECAYCTKTFKSSANMYSHRKKMHLAAWTQDCHKRSAILEKIPKTEELNMAIG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -