Basic Information

Insect: Pseudolycoriella hygida
Gene Symbol: -
Assembly: GCA_029228625.1
Location: CM055403.1:99063913-99065868[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 2.6e-06 0.00032 22.5 0.4 1 23 49 71 49 71 0.97

2 16 8.3e-07 0.0001 24.1 2.0 1 23 77 99 77 99 0.97

3 16 0.0055 0.68 12.1 0.5 1 23 105 127 105 127 0.97

4 16 8.4e-06 0.001 21.0 1.4 1 23 133 155 133 155 0.98

5 16 0.00012 0.015 17.3 2.0 1 23 161 183 161 183 0.96

6 16 6.3e-06 0.00077 21.4 1.9 1 23 189 211 189 211 0.98

7 16 0.007 0.86 11.8 7.3 1 23 217 239 217 239 0.96

8 16 0.001 0.12 14.4 1.1 1 23 245 267 245 267 0.97

9 16 5.5e-08 6.7e-06 27.8 1.6 1 23 273 295 273 295 0.98

10 16 0.001 0.12 14.4 5.8 2 23 447 468 447 468 0.95

11 16 2.3e-06 0.00028 22.7 0.8 1 23 478 500 478 500 0.98

12 16 5.9e-05 0.0072 18.3 2.3 3 23 508 528 506 528 0.98

13 16 0.021 2.6 10.2 3.8 1 23 534 556 534 556 0.96

14 16 0.00013 0.016 17.2 0.7 1 23 562 584 562 584 0.98

15 16 0.0021 0.26 13.4 2.1 1 23 590 612 590 612 0.96

16 16 6.7e-05 0.0082 18.1 0.9 1 23 618 640 618 640 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	2.6e-06	0.00032	22.5	0.4	1	23	49	71	49	71	0.97
2	16	8.3e-07	0.0001	24.1	2.0	1	23	77	99	77	99	0.97
3	16	0.0055	0.68	12.1	0.5	1	23	105	127	105	127	0.97
4	16	8.4e-06	0.001	21.0	1.4	1	23	133	155	133	155	0.98
5	16	0.00012	0.015	17.3	2.0	1	23	161	183	161	183	0.96
6	16	6.3e-06	0.00077	21.4	1.9	1	23	189	211	189	211	0.98
7	16	0.007	0.86	11.8	7.3	1	23	217	239	217	239	0.96
8	16	0.001	0.12	14.4	1.1	1	23	245	267	245	267	0.97
9	16	5.5e-08	6.7e-06	27.8	1.6	1	23	273	295	273	295	0.98
10	16	0.001	0.12	14.4	5.8	2	23	447	468	447	468	0.95
11	16	2.3e-06	0.00028	22.7	0.8	1	23	478	500	478	500	0.98
12	16	5.9e-05	0.0072	18.3	2.3	3	23	508	528	506	528	0.98
13	16	0.021	2.6	10.2	3.8	1	23	534	556	534	556	0.96
14	16	0.00013	0.016	17.2	0.7	1	23	562	584	562	584	0.98
15	16	0.0021	0.26	13.4	2.1	1	23	590	612	590	612	0.96
16	16	6.7e-05	0.0082	18.1	0.9	1	23	618	640	618	640	0.98

Sequence Information

Coding Sequence: ATGGAATCGAAAGATTCTCCCGCCAAATTGAAAAGTACTGTCACTGACTCTATTTTGGGCTGTAGTCTACCGAACATGTCACCAAAATTAAAAGATCATGATAGCAAAAATACAGAATTTAATCTAGACTTGCAAAGTTGTCAATTCACTTGTGACGAATGTGGAAAAGTATTCAATCGAAAGCTTAACCTTATAAGCCACTCGGCAACCCACACCAGCGATAAGCCGTTCTTTTGTGATAAATGTGGACTTAGTTTCGAACAAAAATCATATCTTCGTGCCCATCGACGAACGCACACTACCAAAAAGTCGTTTGTTTGCCAAGAATGTGGCAGTACATTTCCCTGTAACTCAGGTTTGGAGACACACCTTATATCACATTCTGGTGAAAAACCTTTCGTGTGCGATGAATGTGGAATACGATTCACgcgaaaatttactttggaACAACACAAACAAAGGCATACCAACGGGAAATCATTTGTTTGCGACTTATGCGGAATGAGATTCGCTCACAAAAGTTACTTAAGATTGCACAAAGTGAAGCACACGTCTGAGAAGCCTTATCGCTGTGACGTTTGTGGATTGAGCTTTGCGAGAAAACATCAACTAAAGTCACACAACATTACACACACTggtgaaaaacaatttccttGCGATGAATGTCACATGCGATTCACAAAGCCGTGCCACTTAAAACAACACAAACTACAACACACCGGTATCAAACCGTTCGCTTGCGATGAGTGCGAAATGAGATTCACCCTGAAGTTTTCTTTAAAGGCACACAAGTTAAAGCACACCGGCGAAAAACCGTTTCCGTGTGAGGATTGCGACAAAAGCTTTAGGACGAAAACTTGGTTAAAACAGCATCAAAGATCGCACAGAGGAAAATCGTTGAAGAAAGATGTACATCTTAAAGAAAGAATTAAAGTGGGAGTTGTGTTTGGCGACATCAAAAGTTCCACACTTTCACAAAACGTGGAGTtaatacgaaataaaaaaatatattcgattATTGAGAACGACGCCAAAGAATTCGTAGATGCTTTAGAAGTGAAAACATCGGAGTCAGTGTTTACAGATAAAGAGAAGTCATTTGATTATGATGAAAGAGCGATTCACTCACAAATATTTCTCAACGAACAACTGTCCTCTTCCGATGGCGAAATGAAAGTTGCAGAAAAGCTATGTGTCGAAATCCATGAAGATGACGACGACACTGTTGAAACCTCAAGTTTCTCTGCTGTGTCATTCGACCGAAAAGAAAAAGAACACAACTACATACAACCACTATCGGCcgatacgaagaacgaagaacTTGAAACGATCGAAAATTCGTGCAAAGATTGTGGCAAAGTGTTTAACCACAAAATGAAACTCTCTAAACACGAATGTTTACATAAAGCAAGATACAAAGGAGAAAAAGCGTACATTTGTGACAAATGTGGAATATCATTTAATAGAAGTTCTCATCTCGCTACTCACGAAATTACACATATTAAGGAGAGACCGTTCGGTTGCGAtaaatgcgaaaaaaaatttaaaacaaattattacTTAAGGCTACACCAACTGAGACACACTGGAGAAAAATTATTCACATGCGATatttgtgaaatgaaattttttgtgaaatgtgAGTTAACCAAACATAAAGTGAAACACACCTCCGAAAAGCCTTTTTCTTGTGAAGTTTGTGGAATGAGATTTGCCAGAAAAACTCAAGTAACATCACACAACATGACGCACACCGGCGAAAAGCGTTTCCCTTGCGATGAATGTGAAATGCGGTTTACTAAGCCATGTCTACTAAGACAACACAAACTACAACATACAGGCATAAAACCATTCGTCTGCGATGAGTGTGAAATGAGGTTCACTTTAAAGTCTTCTTTAAAGGCGCACAAATTAAAACACTGCCTTGAAGGCAACGCAACAAGAGATTCATCATAA
Protein Sequence: MESKDSPAKLKSTVTDSILGCSLPNMSPKLKDHDSKNTEFNLDLQSCQFTCDECGKVFNRKLNLISHSATHTSDKPFFCDKCGLSFEQKSYLRAHRRTHTTKKSFVCQECGSTFPCNSGLETHLISHSGEKPFVCDECGIRFTRKFTLEQHKQRHTNGKSFVCDLCGMRFAHKSYLRLHKVKHTSEKPYRCDVCGLSFARKHQLKSHNITHTGEKQFPCDECHMRFTKPCHLKQHKLQHTGIKPFACDECEMRFTLKFSLKAHKLKHTGEKPFPCEDCDKSFRTKTWLKQHQRSHRGKSLKKDVHLKERIKVGVVFGDIKSSTLSQNVELIRNKKIYSIIENDAKEFVDALEVKTSESVFTDKEKSFDYDERAIHSQIFLNEQLSSSDGEMKVAEKLCVEIHEDDDDTVETSSFSAVSFDRKEKEHNYIQPLSADTKNEELETIENSCKDCGKVFNHKMKLSKHECLHKARYKGEKAYICDKCGISFNRSSHLATHEITHIKERPFGCDKCEKKFKTNYYLRLHQLRHTGEKLFTCDICEMKFFVKCELTKHKVKHTSEKPFSCEVCGMRFARKTQVTSHNMTHTGEKRFPCDECEMRFTKPCLLRQHKLQHTGIKPFVCDECEMRFTLKSSLKAHKLKHCLEGNATRDSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -