Phyg026460.1
Basic Information
- Insect
- Pseudolycoriella hygida
- Gene Symbol
- -
- Assembly
- GCA_029228625.1
- Location
- CM055404.1:112481869-112483995[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0015 0.19 13.8 0.8 2 23 103 124 102 124 0.98 2 17 0.002 0.25 13.5 4.8 1 23 130 152 130 152 0.98 3 17 8.5e-05 0.01 17.8 3.3 1 23 161 183 161 183 0.97 4 17 1.9e-06 0.00024 23.0 3.9 1 23 189 211 189 211 0.98 5 17 6.2e-06 0.00076 21.4 0.2 1 23 217 239 217 239 0.98 6 17 4.3e-05 0.0052 18.7 1.8 2 23 242 263 241 263 0.96 7 17 2e-05 0.0024 19.8 0.6 1 23 269 291 269 291 0.97 8 17 0.0016 0.19 13.8 0.4 1 23 297 319 297 319 0.92 9 17 0.0007 0.086 14.9 1.6 1 23 325 347 325 347 0.97 10 17 0.047 5.8 9.2 0.6 1 23 353 375 353 375 0.98 11 17 0.00014 0.017 17.1 0.9 1 23 381 403 381 403 0.97 12 17 4.8e-05 0.0058 18.6 2.0 1 23 409 431 409 431 0.97 13 17 0.0051 0.62 12.2 2.9 1 23 437 459 437 459 0.97 14 17 0.089 11 8.3 0.5 1 23 597 619 597 619 0.97 15 17 2.7e-06 0.00033 22.5 0.8 1 23 625 647 625 647 0.96 16 17 2.1e-06 0.00025 22.9 0.9 1 23 653 675 653 675 0.98 17 17 2.2e-05 0.0027 19.7 0.6 1 23 681 704 681 704 0.97
Sequence Information
- Coding Sequence
- atggAGGAAGTTTGGATAAAGACGGAACCTGTGGACACCGAATGTTCGGTTATTTCGGACGTGAAATCTGAAGATGTAGTAAATGTCGAGAAGACCGGACCAGAACCCGCAGTAACCCCTGGATCCGAAAACTTGAGAATCAAAGCGGAGATAACGTTTGATGGTAATGAACGTACAGAAGCTCCTGCGAACTCGCCGCAACACTTAAGTAAAGACGACATAAAATGTCAACGACTAATTTCAACGTCtggaaaaaacaaattgaattctGAACAGGCGAAAGCTCAGACCAGTAAAAAGAAGGTCAAATGCGAAGAGTGTGGAGGATTTTTTCTTTCTAGAAGTCATCTTGTGATACACCAACGAATGCATACCGGCGAAAAGCCATTCCAGTGCgataaatgtgaaaataaattcgcTACTAAACGATGTCTGGCTAAGCACATGTTTCGGCACACAGGCGAAGTCCGCGAACGGCCGTTCCATTGCTTAAAGTGTGGGAAAACATTTATGGATAAAACCGGCCTTAAAACACACATGGTAAAACACTCCAATCAGGTGCCCTTCTCATGtgatttgtgtgaaaaaaaattttcgcaaaaatcaAATCTTCATGTGCATCTTCGAAGGCATACTGGAGATAAGCCATTTGTGTGCGACGAATGTGGAAAAGCATTTACCATCAAGGCGTCGCTTTTGAAGCATCAAACCGTTCATTCGTTATCTTGCGATAAGTGCGAACTTACTTTCTCCCATCCGTCTGACTTGAAATCGCACAGACTATCACATGCAGCAGATAATCCATTTGTTTGTGACGAGTGTGGAAAAACCTTTTTCGGAATAAGAAATTTGACGAGGCATCAAGTTCGCCATTCTGGAAATAAGACCTACGCTTGCGATGAGTGTGGAATGAAATTTTACTACAAAAGTGAAGTGACACAACACAAAGTGGCGCATTTAAACGAGAAACCATTTGCTTGCGATGAATGTGaatctaaatttaaaaataaaacttcgTTGAGGCTACATAAATTGACGCATAGTGATGAGAAACCATTCTCTTGCGATGTATGTGGCAACAGATTTCTATTGAAACGGCAAGTGACATCGCACATGATAACACACACCGGCGAAAGACCATTCGCCTGCGATGAATGTGAAATGAGATTTTCCAAGTTGTGGCTGCTAAAACAACACAAGCGAACGCATACCGGGGAGAGGCCGTTTCCTTGTGACGAGTGTGGTTTGACattcaccaaaaaattttaCCTCAAGTCCCACAAACTAAAGCACACGGGCGAGAGGCCGTTTGCCTGCAATTTTtgcccaaaaagattttttacgaAAACTTTACAGCGACAACACGAAAGATCTCATACCGGAAAATCAGCAAGTCAACAGAAAGCATCGCAAAAAAAGACTAAAGTGGAAACGGAATCAGAGCCCATGATCGAAAGTCAAGATAAATTCGAAAGCATCGCATCATCAGAAGCTAAAATTGATTCCGTGGATGAGACGAGTGATCACGGAAACGATGGCGTCGCATCCGAAGACACATTTGAAGATTTAGAGGAAGAAATGCAACAAGCTACGCTAATCCCATCCGATAAAATCGCATTGCAAGAACAAATTAACGAGGCAGTTCCTCAGGAAATGCATTCAGCGGAGCAAGAGTTTCCTAGCAAAGAATTTGTCGCTATTTTTGAGGAGAAACTTCTCACAGAAATAGTTTCTGAGAAATCTGGCAAGAAAACTTACCGCAGAAAGCGCCGTATTCCCGAGAAACCCTTCTCCTGCGATGAGTGTGACGGTAAATTTACATCGGACACAATTCTCAGACTGCATAAGCGAATTCACACCGGTGAAAATCGATTCGTTTGCGAGGAATGCGGTAAGGCATTTAACCGAAATTATAACTTGGacaaacataaattcattcatacTGGCCTGAGGCCATACTCATGCGATGAATGCGGACAAACATTCGCCCAGAAAAGTCACATCGCTGTTCACTTACGCAGACATTTTGGCGTTAAGCGCTATTCATGCAGCGATTGTGGAATGGAATTCGTTACGATGTATCAACTGAAAGCACACAAAAAGCGTATTCACCGTTTAGTTTCGTGA
- Protein Sequence
- MEEVWIKTEPVDTECSVISDVKSEDVVNVEKTGPEPAVTPGSENLRIKAEITFDGNERTEAPANSPQHLSKDDIKCQRLISTSGKNKLNSEQAKAQTSKKKVKCEECGGFFLSRSHLVIHQRMHTGEKPFQCDKCENKFATKRCLAKHMFRHTGEVRERPFHCLKCGKTFMDKTGLKTHMVKHSNQVPFSCDLCEKKFSQKSNLHVHLRRHTGDKPFVCDECGKAFTIKASLLKHQTVHSLSCDKCELTFSHPSDLKSHRLSHAADNPFVCDECGKTFFGIRNLTRHQVRHSGNKTYACDECGMKFYYKSEVTQHKVAHLNEKPFACDECESKFKNKTSLRLHKLTHSDEKPFSCDVCGNRFLLKRQVTSHMITHTGERPFACDECEMRFSKLWLLKQHKRTHTGERPFPCDECGLTFTKKFYLKSHKLKHTGERPFACNFCPKRFFTKTLQRQHERSHTGKSASQQKASQKKTKVETESEPMIESQDKFESIASSEAKIDSVDETSDHGNDGVASEDTFEDLEEEMQQATLIPSDKIALQEQINEAVPQEMHSAEQEFPSKEFVAIFEEKLLTEIVSEKSGKKTYRRKRRIPEKPFSCDECDGKFTSDTILRLHKRIHTGENRFVCEECGKAFNRNYNLDKHKFIHTGLRPYSCDECGQTFAQKSHIAVHLRRHFGVKRYSCSDCGMEFVTMYQLKAHKKRIHRLVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -