Basic Information

Insect: Pseudolycoriella hygida
Gene Symbol: -
Assembly: GCA_029228625.1
Location: CM055403.1:17678211-17685762[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 0.00011 0.014 17.4 0.1 1 23 26 48 26 48 0.98

2 21 0.0083 1 11.5 1.3 2 23 55 76 54 76 0.92

3 21 7.7e-05 0.0094 17.9 0.6 1 23 81 103 81 103 0.99

4 21 0.00015 0.019 17.0 1.8 1 23 108 130 108 130 0.98

5 21 9.3e-06 0.0011 20.8 3.8 1 23 137 159 137 159 0.99

6 21 4.1e-05 0.005 18.8 0.9 1 23 165 187 165 187 0.98

7 21 5.5e-05 0.0068 18.4 6.2 1 23 193 215 193 215 0.99

8 21 1.3e-05 0.0016 20.4 1.4 1 23 221 243 221 243 0.98

9 21 0.0075 0.91 11.7 3.8 1 23 249 271 249 271 0.99

10 21 0.00027 0.033 16.2 0.4 1 23 532 554 532 554 0.98

11 21 0.45 55 6.1 1.9 1 21 558 578 558 579 0.94

12 21 0.19 24 7.2 0.1 2 23 592 615 591 615 0.94

13 21 6.7e-08 8.2e-06 27.6 1.6 1 23 621 643 621 643 0.98

14 21 0.00021 0.026 16.5 4.1 1 21 649 669 649 671 0.94

15 21 0.0031 0.38 12.9 2.5 1 23 677 699 677 699 0.98

16 21 0.0066 0.81 11.8 2.7 1 23 704 726 704 726 0.98

17 21 0.00018 0.022 16.8 3.8 1 23 735 757 735 757 0.98

18 21 0.0002 0.025 16.6 1.0 1 23 763 785 763 785 0.99

19 21 0.00048 0.058 15.4 3.5 5 23 794 812 791 812 0.97

20 21 0.00021 0.025 16.6 1.2 1 23 821 843 821 843 0.96

21 21 0.0018 0.23 13.6 3.7 1 23 849 871 849 871 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	0.00011	0.014	17.4	0.1	1	23	26	48	26	48	0.98
2	21	0.0083	1	11.5	1.3	2	23	55	76	54	76	0.92
3	21	7.7e-05	0.0094	17.9	0.6	1	23	81	103	81	103	0.99
4	21	0.00015	0.019	17.0	1.8	1	23	108	130	108	130	0.98
5	21	9.3e-06	0.0011	20.8	3.8	1	23	137	159	137	159	0.99
6	21	4.1e-05	0.005	18.8	0.9	1	23	165	187	165	187	0.98
7	21	5.5e-05	0.0068	18.4	6.2	1	23	193	215	193	215	0.99
8	21	1.3e-05	0.0016	20.4	1.4	1	23	221	243	221	243	0.98
9	21	0.0075	0.91	11.7	3.8	1	23	249	271	249	271	0.99
10	21	0.00027	0.033	16.2	0.4	1	23	532	554	532	554	0.98
11	21	0.45	55	6.1	1.9	1	21	558	578	558	579	0.94
12	21	0.19	24	7.2	0.1	2	23	592	615	591	615	0.94
13	21	6.7e-08	8.2e-06	27.6	1.6	1	23	621	643	621	643	0.98
14	21	0.00021	0.026	16.5	4.1	1	21	649	669	649	671	0.94
15	21	0.0031	0.38	12.9	2.5	1	23	677	699	677	699	0.98
16	21	0.0066	0.81	11.8	2.7	1	23	704	726	704	726	0.98
17	21	0.00018	0.022	16.8	3.8	1	23	735	757	735	757	0.98
18	21	0.0002	0.025	16.6	1.0	1	23	763	785	763	785	0.99
19	21	0.00048	0.058	15.4	3.5	5	23	794	812	791	812	0.97
20	21	0.00021	0.025	16.6	1.2	1	23	821	843	821	843	0.96
21	21	0.0018	0.23	13.6	3.7	1	23	849	871	849	871	0.98

Sequence Information

Coding Sequence: ATGGATAGCTCAGAGCTATCAACGGTGACCACTTCAAATAAGTCGAGAAACGTAGCGGaagaatacaaaagaaaatttcaatgtCAAATATGCCGTGTTCGATTCGGGTCGCAAGAAAACTTAGAAATTCATCAGATAATCCATCAATCGGACGGCGTAATCAAATGCACAATTTGTGAAAAACACTTTGACAGCGTGCACAgcTTAATGGCTCATAATGTGgtacattcaaataaaaaattcaagtgCCAATTGTGTGATGTTTGGTTCAAGACAAGTGGCAATTTGAAGGAGCATATGAAAGTCCATAAGGGACTGGTATTCAAATGCTCTCACTGTGGCAAAGACTTCAACAAAATTGGAAATTTACTGTTACACGAAATGAGGCACACCAAGTCTTTGAAACAATTCCAATGTGATCTTTGTCCAAGAATTTTCACCCAGAAATGCTTGTTGAAGTACCATATGAGAACTCACACGAATGAACGTCCATACAAATGTTTATCGTGCGATTCGGCATTTGCCGATAAAAGTAATTTGAAGAAACACTCGAGGATACATTCGGGAGAAAAGCCATTCAAATGCGAACAGTGTGATAAATCGTTTAATCAGAAGAGTTCTTTGACGTGTCACAGGCGAACACATGTCACGTTTAAGCCGCATGAATGCCACTACTGTGGTAAGAGATTCGGTTTGAACGAGGAATTGATCGTACACTTGAGAGTGCATGGTGAAAATAGGAAATTCAAATGCAGCATTTGTGATGACGAATTTGTGGAGCATTGCTATCTCAAGTCACATATGCGAATACATGACATGAAAACGGCGGGTAATAAGTCTGTCCAAGTGTTCCGGTCAACTTACATAAATGCCGATGAACCGACTTGCCTCATGTCAGTGAATGGTGACGTCAATactttggaaaaaattgttctgaaaAGGAGACACAACCGATCGGAAAACGGACAAAAACGTCGACGTAATCGCGTTGAGGAAAGCGCTAAAACTCATGAACAATCAAAAAGCAAATCGATGGAAAAAAATCTGAATCCAAAACTCGAATATGACTCGGCGAGAGTGGAACCAGAACCAGAAATTAAGCATTTTGAGGGTGAATTACAATCCGAGGAACTTCCTCACTTATCTCCGGAGGGTGAAAATTATCTCAAAACTGAAATTAAAGAGGAAATCAGCGGCGAGGACGATACGTCTATTCCATTTGTATGCGTATCGATCAAAGTTGAACCTGCTGACTTGACATTTACCGACCAGAATCAGGAAATGGAAGAATTAAATGACAATTCGAACTTTGATTTTGCCTCACAATCCGGAATCGATTCGGATTCGGGTGATGAAAAGCCCCTTGTGCAACGTACTGAGTCCATAAAACGCTTGTCGATCGAGTCCGATGAGAAACCATCGAATCCAATGGATAAGTTCAAACATATTATCGAATCGTCATTTCCAATAGTTCTAATCGAGCGACTAAAATATCCACAACCCACAACCGTCGAAACGGTCGAAGTACAATGTGTAACGAACGCATCGAGCGAAAATCGGTCCAATTCATTCAGTGACGAACCGAATTCTTTGTACAAGTGTACATACTGTTCGAAGGAATTGAAAACCTGGGCCACCCTCATAATGCACGAGCAAGTTCATCGGAAAACATTCGATTGTCCCACATGCAATTTCCACTGTACCAACATACTCGACTTGATCAAGCATACCAAAGAGAATTCGAGTTGTTCAAGGAAACAAACGTCGACGGTGACGTGCTCGATTTGTAACAATGGCGTTGTGTATAGGAATAAAGCTGCTCTCAGTTACCATATGACTGTGCATACTGGAGCCAGACCATTCATCTGTGATGTTTGCAACAAAACGTTCCGTTCCAAGGATAACCTTCGCCAACACATGAACAGTCACGAAAGTGTCTCAAATTTCAACTGCGAAGTCTGTGGCCGTGGTTTCACCAATAAAAATCATTTGCAacaacatcaactctgtcaCACGGATGAGAAACCATTCCGTTGCGatatttgtaataattttttcaaatcgcAAGGACGTCTGTACAATCACAAGAAAATCCATATGAAGCCGCAATTCAGTTGTTGCTACTGTAGTAAAGAGTTTACAATCAtcggaaatttgaaaattcacgaaaaaagaCACATGAGCAGCGAGTTGGTTGAAAAATTCGAATGCAATATTTGTGGCAAGAAGTTCCTCTTGAAGCACGACCTCAAATATCATATGCGCAAACACAATGGTGAAAGACCGTATCAGTGTTCGTTGTGTCCGTCTCGATTCGCTGATATTAGCAATTTGCATAAACACGTTAAGATACACACTGGAGATAAGCCATTTGTTTGTCACTGTGGTAAATCGTACAATCAACAAAGTTCATTGAACACACACAAAAAAACGCATTTGGTGGCCACGttatttgaaacatttttgtgcacACATTGTCCCAAAAAATTTGCATTAGAAGAAGATCTAACGCTTCATCTTAGAAGTCACGGCATTAACAGTATGTTTAAGTGTAACTACTGTGATAAGGAATACGAATTGTTAAACCACATGAAATCCCATCGTcgaattcatttaaatttacaattaaAGCGCAATAAATTTTTATGGCCAAAAAAGATCGATAACACCACCGACAAACTCAATGGTAACGAGGCGAAGCAAAATGATCTTGAACCCTAA
Protein Sequence: MDSSELSTVTTSNKSRNVAEEYKRKFQCQICRVRFGSQENLEIHQIIHQSDGVIKCTICEKHFDSVHSLMAHNVVHSNKKFKCQLCDVWFKTSGNLKEHMKVHKGLVFKCSHCGKDFNKIGNLLLHEMRHTKSLKQFQCDLCPRIFTQKCLLKYHMRTHTNERPYKCLSCDSAFADKSNLKKHSRIHSGEKPFKCEQCDKSFNQKSSLTCHRRTHVTFKPHECHYCGKRFGLNEELIVHLRVHGENRKFKCSICDDEFVEHCYLKSHMRIHDMKTAGNKSVQVFRSTYINADEPTCLMSVNGDVNTLEKIVLKRRHNRSENGQKRRRNRVEESAKTHEQSKSKSMEKNLNPKLEYDSARVEPEPEIKHFEGELQSEELPHLSPEGENYLKTEIKEEISGEDDTSIPFVCVSIKVEPADLTFTDQNQEMEELNDNSNFDFASQSGIDSDSGDEKPLVQRTESIKRLSIESDEKPSNPMDKFKHIIESSFPIVLIERLKYPQPTTVETVEVQCVTNASSENRSNSFSDEPNSLYKCTYCSKELKTWATLIMHEQVHRKTFDCPTCNFHCTNILDLIKHTKENSSCSRKQTSTVTCSICNNGVVYRNKAALSYHMTVHTGARPFICDVCNKTFRSKDNLRQHMNSHESVSNFNCEVCGRGFTNKNHLQQHQLCHTDEKPFRCDICNNFFKSQGRLYNHKKIHMKPQFSCCYCSKEFTIIGNLKIHEKRHMSSELVEKFECNICGKKFLLKHDLKYHMRKHNGERPYQCSLCPSRFADISNLHKHVKIHTGDKPFVCHCGKSYNQQSSLNTHKKTHLVATLFETFLCTHCPKKFALEEDLTLHLRSHGINSMFKCNYCDKEYELLNHMKSHRRIHLNLQLKRNKFLWPKKIDNTTDKLNGNEAKQNDLEP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -