Phyg017437.1
Basic Information
- Insect
- Pseudolycoriella hygida
- Gene Symbol
- -
- Assembly
- GCA_029228625.1
- Location
- CM055404.1:14384588-14386375[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00025 0.031 16.3 1.3 1 23 90 112 90 112 0.98 2 17 0.00023 0.028 16.4 1.6 1 23 118 140 118 140 0.97 3 17 2.2e-05 0.0027 19.6 1.0 1 23 146 168 146 168 0.98 4 17 0.00019 0.024 16.7 0.3 3 23 182 202 180 202 0.98 5 17 2.2e-05 0.0027 19.6 3.5 1 23 208 230 208 230 0.97 6 17 0.0083 1 11.5 1.0 5 23 239 257 236 257 0.96 7 17 0.00012 0.015 17.3 0.6 1 23 263 285 263 285 0.98 8 17 1.1e-05 0.0014 20.6 0.6 1 23 291 313 291 313 0.97 9 17 3.7e-05 0.0045 18.9 1.6 2 23 320 341 319 341 0.97 10 17 7.6e-05 0.0093 18.0 0.9 1 23 347 369 347 369 0.97 11 17 2.9e-05 0.0035 19.3 1.2 2 23 376 397 375 397 0.97 12 17 7.2e-06 0.00089 21.2 0.3 1 23 403 425 403 425 0.98 13 17 5.3e-06 0.00065 21.6 1.0 1 23 431 453 431 453 0.97 14 17 0.00047 0.057 15.5 5.0 1 23 459 481 459 481 0.98 15 17 1.6e-05 0.0019 20.1 2.6 1 23 487 509 487 509 0.98 16 17 0.00072 0.089 14.9 0.8 1 23 515 538 515 538 0.94 17 17 2e-05 0.0025 19.8 0.6 1 23 570 592 570 592 0.98
Sequence Information
- Coding Sequence
- ATGGAAGAAGTTTGGATAAAAACCGAACCAGTTGATGTTGAATACTCTGCTGATTTCTCTGTCAAAGTTGAAAAGGATGAAAGCAGCAGTTTCTACAACGCTGAGCCATTACCGGTTAAGGTCGCAGACAACGAAGATGTTGAATATCTGAATATTAAAACGGAAATTACGCTTGGAGAATATGAAATCACTCAGTCCAGCATAGCAACAACTCcaatcgaaaatgaaattccaCCAAATTGCGTTCCTCCAAAGACTCACGATGAGTTTGTTTGTAAGGAATGTGGACAAGTATTTGATGGCGAgagaaaattcaataaacatttcCGATCTCATTTTGGTGGGAAACCATTTGCTTGCGACGAATGTGAAAAGAGATTTCGTCTGCAGAATCAACTAGATCAACACAAGCGAAGGCACAGCGGGGAGAAACCTTTTGAATGTTACGAATGTGGGAAAAGATatatgcgaaaattgaatttgagagatcaCCAAATGATTCACGCTGGTCTACAGCCCCGCTTTCGGGACAAAAGGTTTGGTTGCGAGGAATGTGACGCAAAATTTCCTTCAAGAAGTGCCCTTAAGTCGCATAATCGTATGCACACAGGAGAAAGACCGTACGCGTGTGAACAATGTGGAAAGAGATTTCATCACTCGTATAGCTTAGCGAAGCACATGGTTTCACATTCCGATGACAAGCCTTTCGTTTGCGAATGTGGACAGAGATTTAAACGCATCTATTCTTTAAGAATTCACAAATTAAAGCACACCCCTAAACTCTCATTCTCCTGCGATAAATGTGGAAAAGACTTTGCGCTGAAAAATAGACTTTTGGTCCATTTACGGATGCACAGCGGCTATAAACCTTACGTTTGTGATGAATGTGGAAAAGCATTTGCTTTCAATTCGAGTTTCCTTCGGCACAAACTTCAGCATTCCGATGAAAAGTCCTTGTCTTGCAACACATGTGCACTAACTTTCTCCAACTACAGTGACTTGAAAACGCACAGACGAACGCATGTAACGGAGAAGCCGTTCGTTTGCGATGAATGCGGCAAAACGTATGAGAAGAGAGCATCTCTTACCGAACACAAATTCCGTCATTCTACAGAAAAGTCGTTGGTATGCGATGAGTGCGGTATGAAATTTCATCGACCTAACGCATTGACGCAACACAAACGGACGCATACCGGCGATAGACCGTACGTCTGCGATGAATGTGGGGCAAGGTTTACTCAAAAATCTGCCATGAAAATACACAAACTCACGCACACCAATGACATACCATTCGCTTGCGATGTGTGTGATCGGAGATTTCGTACAAAGGGCCAAGTCAAGTCGCACCAAATGACTCACACTGGAGTTACACCTTATCACTGCGATCAATGCGAAATGAAATTTGCCAGACCTCACCAACTCAGATCTCACAAACAAACTCACACCGGCGAGAGACCATTTTCGTGCGACGAATGTGGCTTAACGTTCACCCGAAAATTTTACCTCAATACTCACAAACTGAAGCACACTGGTGTGAGACCATTCGCCTGCAACGAATGTCCAGcgaaattttatactaaaaccGGTCTGAGACAACACGAGCGTTTTTCGCACAttgaaaaatcaggaaaaaagcaGAAAGGTACGAAAAACAACCAAACGGATAATTCGGCTAAATATAAGAATTTTCACACCGCCTTTAAATCGTTCTCTTGCGACGTTTGCGGATTGACGTTCGCCCAAAAAAATCATATCGCTATTCACATACGAAAACATTCTAGTATTTAG
- Protein Sequence
- MEEVWIKTEPVDVEYSADFSVKVEKDESSSFYNAEPLPVKVADNEDVEYLNIKTEITLGEYEITQSSIATTPIENEIPPNCVPPKTHDEFVCKECGQVFDGERKFNKHFRSHFGGKPFACDECEKRFRLQNQLDQHKRRHSGEKPFECYECGKRYMRKLNLRDHQMIHAGLQPRFRDKRFGCEECDAKFPSRSALKSHNRMHTGERPYACEQCGKRFHHSYSLAKHMVSHSDDKPFVCECGQRFKRIYSLRIHKLKHTPKLSFSCDKCGKDFALKNRLLVHLRMHSGYKPYVCDECGKAFAFNSSFLRHKLQHSDEKSLSCNTCALTFSNYSDLKTHRRTHVTEKPFVCDECGKTYEKRASLTEHKFRHSTEKSLVCDECGMKFHRPNALTQHKRTHTGDRPYVCDECGARFTQKSAMKIHKLTHTNDIPFACDVCDRRFRTKGQVKSHQMTHTGVTPYHCDQCEMKFARPHQLRSHKQTHTGERPFSCDECGLTFTRKFYLNTHKLKHTGVRPFACNECPAKFYTKTGLRQHERFSHIEKSGKKQKGTKNNQTDNSAKYKNFHTAFKSFSCDVCGLTFAQKNHIAIHIRKHSSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -