Phyg044471.1
Basic Information
- Insect
- Pseudolycoriella hygida
- Gene Symbol
- -
- Assembly
- GCA_029228625.1
- Location
- CM055406.1:125786420-125789100[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 5.3e-07 6.5e-05 24.7 1.2 1 23 84 106 84 106 0.97 2 21 1.6e-05 0.0019 20.1 2.4 1 23 112 134 112 134 0.97 3 21 0.005 0.61 12.2 4.9 1 23 140 162 140 162 0.98 4 21 0.00052 0.064 15.3 1.3 1 23 168 190 168 190 0.97 5 21 2e-06 0.00025 22.9 0.4 1 23 205 227 205 227 0.98 6 21 0.00084 0.1 14.7 1.1 1 19 233 251 233 253 0.95 7 21 5.5e-05 0.0067 18.4 1.7 1 23 261 283 261 283 0.97 8 21 2.4e-07 2.9e-05 25.9 1.2 1 23 289 311 289 311 0.99 9 21 1.3e-05 0.0015 20.4 1.7 1 23 317 339 317 339 0.98 10 21 0.00015 0.019 17.0 3.0 2 23 346 367 345 367 0.96 11 21 1.8e-07 2.2e-05 26.2 1.1 1 23 373 395 373 395 0.98 12 21 0.00056 0.069 15.2 1.0 1 23 401 423 401 423 0.97 13 21 2.9e-06 0.00036 22.4 0.6 1 23 429 451 429 451 0.97 14 21 0.049 6 9.1 0.9 1 23 457 479 457 479 0.97 15 21 6.7e-05 0.0082 18.1 2.9 1 23 485 507 485 507 0.97 16 21 4.1e-05 0.005 18.8 1.0 1 23 513 535 513 535 0.97 17 21 0.00086 0.11 14.6 0.4 1 23 541 563 541 563 0.98 18 21 0.00042 0.051 15.6 1.7 1 23 728 750 728 750 0.98 19 21 4.9e-05 0.006 18.5 1.7 1 23 756 778 756 778 0.90 20 21 9.2e-05 0.011 17.7 1.2 1 23 784 806 784 806 0.98 21 21 0.59 72 5.7 0.9 1 23 812 835 812 835 0.93
Sequence Information
- Coding Sequence
- ATGAGTCGATCCGTAGgTCGATTGGCTACCACGGAAGAGGTGTGGATAAAAACAGAACTTTCTGAGGATGCTGAATCGTCCGCTCCTTCACAtctaaaatgtgaagaaaccgAACGTAGTCCCGTGGATAATGGACCGTTGACGTCGAAAACCGTCCAAGGTACTAGCGACAAGTCCGACAGAACAAACAGAGAATCCGACGGCACGACATCGAAAACAGAAAGAAATGAGCGAACCGGTTTAGGCAAATTTGAATGTGATGAATGTGGCAAAAGATTCAACCGAAAGGAAACTCTCACCAGACACAAACTCATTCATTCAGGCGAAAAGCCGCATTCATGCGACGAGTGTGGAATGTCATTTACTCAACGATATCTTTTGAACTCTCACAAACTAACGCACACCGGCGAAAAGCCGTTTTCTTGCGATGAATGCGAAATGAAATTCTATCGAAAGTGTCAAGTAAATCGGCACAAAATGACACACACCGGTGAGAAGCCTTTTGCTTGTGATCAATGTGGTGTAAAATATCAGCAAAAGTCTTCGCTCAACGAACACAAGAAGAAGCATACACTTGATTCTTACACAACTGCTGCGATacgtaaaaaaaagttcaattgCGAGGAATGTggtagaagttttttttcaagAGGTGGCCTTGAAATACATCAACGGACACACACCGGTGAAAAACCGTTCGAATGTGAAGAATGTGGCAAAAAGTTCGGTCACAAGAACAGTTTGGCTTTGCACAAATTTTGCCATTCTGGCGAGAAGCCGTTCGCCTGTGATGAGTGCGGACAGACATTTTCGAGAAAACGCTACATGAAAATTCATAAACTCAAGCACACCGGCGAGCAGCCCTACTCTTGCGATAAATGTGAAAAACGATTTGCGCAAAAATCGAATCTCATCGTTCATCTGCGAAAGCACACGGGCGAGAAACCATTTGTGTGCGACGAATGCGGAAAGTCGTTTTTCTTCAAAGCGACCCTTTTGCGGCACAAGCGACAACATTCCGGCGAAACTGCTTTGACTTGTCATCATTGCGAAGTGTCGTTCAAACAAATGAGTGAATTAAAAGCGCACCGTTTGATACACGTAATAGACAAGCCATTCGTCTGTGACGAATGTGGAAAGAGTTTCACTCAAAAGAGAAGTCTGACTGAGCACCAACTTCGCCATACTGGGGCGAAGCCTTTCGCTTGCGAAGACTGTGGCATgagattttatataaaaaatgaaatgcgaCAACACAAACGCACGCATACTGGAGAGAGACCATTCGCTTGCGATGAATGTGGAGCGAGATTTAGCCAAAAGTCATCATTGAATCAGCACAAGCTAACGCACACCAACGAAAAGCCGTTTTCTTGTGACGTTTGTGGTATGAGATTTCTGAAAAAGATTCAAGTAACTTCGCACAAAATGACGCACACTGGCGAAAGGCCTTTCGCCTGCGATGTATGCGGAAAGGGATTCACCAAACCGTGTCACGTACGAGCGCATAAACGAACGCATACCGGTGAGAAGCCATTCGCTTGCGATGAGTGCGGAATGCGATTTACGTCGAAAATTTCGCTTAAAACTCATAAACTGAAGCACACTGGCGTGAGACCGTTTCCATGCACCGAATGTCCTGCGAAGTTTTTTACATTGACTGGACTGAGACAACATGAAAGATCACACACTGGAAAATCAGGGAAACAAAAGAAAAGACTTCCCGCCGGGCAATCCAAATCGAAAGTTGAAGTAGAACCGAGTCCAGTGGCAATCGAACATGAACCGAAATTTTGTGAATTCGGAACCATTACGACGACCGAAAGCGTTCCACTTCCGCAGGAAAACGAAAATCAAGACTCCATTCATGTAACTAGTCATGACGACGATACTGGCAATGCATTTGATGacatttttgaagatttgaatGAAGAAATACAAGAGCCGCCGCCACAAACTCTTTGTGAAAGGATCGAAATTCCAATGCAGTTGCAGACCGTGCAGAGAAATGAAGTGATGCCCCCACAAACGAATGCGGTGCAGCAGCTGTTGCACAGCAACGAATTCGCCACCACATTTGTGGAGAAGTTAACCGTTGAAATGAATAAACGAACGTCAGCTAAGGAACATCGAAAGAAAAGCGTTCCCAGAAACAAAACGTTCAATGAGGTCGAAAAACCATTCGCATGTAAGGAGTGCGAAGCTAAATTTGCGTCTGAATTGACTCTCAAACATCATCAGCGGACGCACACTggggaaaattgttttctttgtgACGAATGCGGTAAATCGTTCAACCGAAAGGATACTTTGGCCAATCACAAGTTCTTTCACACCGGCGTTCGTCCATTCTCTTGCGATGAATGCGGAATGACGTTCGCTAAGAAAAATCATATTGTTGTTCATCTACGCAGACATTTTGGTATTAAGCGCTATTCCTGTGACGAATGTCCGTCGAAATTCGTCACCATGTTTGGCGTCAGAGAACACAAACAACACGCGCACCGCAAGCAACagcgaaaaaagaaataa
- Protein Sequence
- MSRSVGRLATTEEVWIKTELSEDAESSAPSHLKCEETERSPVDNGPLTSKTVQGTSDKSDRTNRESDGTTSKTERNERTGLGKFECDECGKRFNRKETLTRHKLIHSGEKPHSCDECGMSFTQRYLLNSHKLTHTGEKPFSCDECEMKFYRKCQVNRHKMTHTGEKPFACDQCGVKYQQKSSLNEHKKKHTLDSYTTAAIRKKKFNCEECGRSFFSRGGLEIHQRTHTGEKPFECEECGKKFGHKNSLALHKFCHSGEKPFACDECGQTFSRKRYMKIHKLKHTGEQPYSCDKCEKRFAQKSNLIVHLRKHTGEKPFVCDECGKSFFFKATLLRHKRQHSGETALTCHHCEVSFKQMSELKAHRLIHVIDKPFVCDECGKSFTQKRSLTEHQLRHTGAKPFACEDCGMRFYIKNEMRQHKRTHTGERPFACDECGARFSQKSSLNQHKLTHTNEKPFSCDVCGMRFLKKIQVTSHKMTHTGERPFACDVCGKGFTKPCHVRAHKRTHTGEKPFACDECGMRFTSKISLKTHKLKHTGVRPFPCTECPAKFFTLTGLRQHERSHTGKSGKQKKRLPAGQSKSKVEVEPSPVAIEHEPKFCEFGTITTTESVPLPQENENQDSIHVTSHDDDTGNAFDDIFEDLNEEIQEPPPQTLCERIEIPMQLQTVQRNEVMPPQTNAVQQLLHSNEFATTFVEKLTVEMNKRTSAKEHRKKSVPRNKTFNEVEKPFACKECEAKFASELTLKHHQRTHTGENCFLCDECGKSFNRKDTLANHKFFHTGVRPFSCDECGMTFAKKNHIVVHLRRHFGIKRYSCDECPSKFVTMFGVREHKQHAHRKQQRKKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -